Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2126
         (575 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599     30   1.5  
09_04_0284 + 16384553-16384755,16384884-16385199,16385889-163859...    29   3.5  
05_05_0087 - 22291732-22292029,22292967-22293034,22293640-222937...    29   3.5  
01_05_0559 + 23281408-23282457,23282580-23282942,23283938-232839...    27   8.1  

>07_03_1009 + 23274632-23274841,23274956-23275084,23275207-23275599
          Length = 243

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 36  PRRTLPTSERGSGGDAAETQLRVSLVLNNNNKPSAPS 146
           PRR  P   RGSG  AA T++  S  +++++KP APS
Sbjct: 184 PRR--PVEARGSGS-AATTRMEKSRRMSSSSKPRAPS 217


>09_04_0284 +
           16384553-16384755,16384884-16385199,16385889-16385971,
           16386802-16386849,16387701-16387965,16388058-16388189,
           16388313-16388448,16388557-16388594
          Length = 406

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 1   PRPPEPKSTSPARGAPCRLANEALAETRRRLSSACHSCS 117
           P PP P  T P RGA    A+ +  E +     A  +CS
Sbjct: 117 PNPPNPPLTHPRRGAFAGFADMSWEEFQASRLGAAQNCS 155


>05_05_0087 -
           22291732-22292029,22292967-22293034,22293640-22293723,
           22295967-22296010,22296210-22296300,22296452-22296634,
           22297594-22297637,22298122-22298355,22298452-22298712,
           22298790-22298915,22298993-22299077,22299171-22299244,
           22299988-22300186
          Length = 596

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/80 (23%), Positives = 37/80 (46%)
 Frame = +1

Query: 1   PRPPEPKSTSPARGAPCRLANEALAETRRRLSSACHSCSTITTSRVHHHVSSLLLIFYVS 180
           PR    ++++ A   P    +   +  RRRLSS+ H   + ++S  +      ++ F   
Sbjct: 172 PRSKVSRTSTKAASGPAESRSSEDSTKRRRLSSSKHGAESESSSDENLSAPPCVVTFNTG 231

Query: 181 VRSVQVMRTTNNTSMILISF 240
           V+ V+V     +T ++L  F
Sbjct: 232 VKIVEVAAGGRHT-LVLSDF 250


>01_05_0559 +
           23281408-23282457,23282580-23282942,23283938-23283991,
           23284088-23284156
          Length = 511

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 20/74 (27%), Positives = 35/74 (47%)
 Frame = +1

Query: 7   PPEPKSTSPARGAPCRLANEALAETRRRLSSACHSCSTITTSRVHHHVSSLLLIFYVSVR 186
           PP  +   P   A   +A  A++ T   LSS   + S+I+T+ +    SS      VS  
Sbjct: 349 PPVQEVRPPVASATATIAAAAVSSTAVTLSSTTFTSSSISTTTI-SIASSTFSPAAVSST 407

Query: 187 SVQVMRTTNNTSMI 228
           ++ +  +T +T+ I
Sbjct: 408 TIAIAASTISTASI 421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,874,770
Number of Sequences: 37544
Number of extensions: 198683
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)