Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2125
(677 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 62 9e-11
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 42 8e-05
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 37 0.002
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 35 0.012
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 33 0.050
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 31 0.12
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 31 0.15
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 30 0.27
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 29 0.47
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 29 0.62
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.82
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 29 0.82
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 28 1.4
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 27 1.9
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 4.4
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 5.8
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.6
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.6
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 7.6
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.6
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 61.7 bits (143), Expect = 9e-11
Identities = 25/41 (60%), Positives = 32/41 (78%)
Frame = +1
Query: 553 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
P+ FEEA FP+YV + VK +G++ PTPIQ Q WP+AMSGR
Sbjct: 120 PVTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 45.6 bits (103), Expect = 7e-06
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +3
Query: 396 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVPV 530
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVV 112
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 41.9 bits (94), Expect = 8e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 553 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
PI F+E + +++G+K YKEPTPIQA WP ++GR
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 37.1 bits (82), Expect = 0.002
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 553 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
P+ F ++ Q +K GY +PTP+Q PI SGR
Sbjct: 167 PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGR 207
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 34.7 bits (76), Expect = 0.012
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 550 NPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 666
NP++ +EEA P + + +K + YKEP+ IQ P+ +
Sbjct: 246 NPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLL 284
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 32.7 bits (71), Expect = 0.050
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 565 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
FE+ + G+ G++ P+PIQ + PIA+SGR
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGR 82
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 31.5 bits (68), Expect = 0.12
Identities = 13/46 (28%), Positives = 23/46 (50%)
Frame = +1
Query: 538 VEXHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
++ P+ + + + ++GY++PT IQAQ P SGR
Sbjct: 411 IDCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGR 456
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 31.1 bits (67), Expect = 0.15
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 565 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
F+E D + + + +G+K PTPIQ + P+ ++ R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 30.3 bits (65), Expect = 0.27
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 556 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
I+ F + + +Q+ +K MG++ T IQ + P ++GR
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGR 127
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 29.5 bits (63), Expect = 0.47
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +1
Query: 565 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
F+ N +++ V G+K+ TP+QA P+ + +
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNK 39
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 29.1 bits (62), Expect = 0.62
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 541 EXHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 648
E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 15 EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.82
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -1
Query: 416 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 243
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 242 HDYFSDLVEDVYLNYGFFLTQG 177
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 28.7 bits (61), Expect = 0.82
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +1
Query: 484 HHMKSKSIEINTRYL*VAVEXHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIA 663
+++ SK +E N R + + F+ + + + G+K PTPIQ + P+
Sbjct: 46 NYIASKLLESNRRTK--GKKGNGKASNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLL 103
Query: 664 MSGR 675
+ GR
Sbjct: 104 LEGR 107
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.9 bits (59), Expect = 1.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 486 PYEVEEYRNKHEVPV 530
PYE++ YRNKH P+
Sbjct: 253 PYEIQVYRNKHWFPI 267
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 27.5 bits (58), Expect = 1.9
Identities = 9/37 (24%), Positives = 22/37 (59%)
Frame = +1
Query: 565 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
F + N +Q+ + +++PT +Q++ P+A+ G+
Sbjct: 16 FSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGK 52
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 4.4
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +1
Query: 124 CWCSANCDQNFYLFLLGGPCV 186
CWC+ ++++ L+GG C+
Sbjct: 285 CWCTMYLTHHYFVDLVGGMCL 305
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 461 WIIKVFVERLE*NRIPIWASHVLPSREF 378
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 260 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 180
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.6
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +3
Query: 417 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNKHEVPV 530
D V L PF K FYDP P LK + +E+ +PV
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV 152
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -2
Query: 583 ENLLLQSIE*DYXPQPPLTGTSCLFLYSSTSYG 485
+NLL E P PP C ++Y+S S G
Sbjct: 226 DNLLSLGKEKPQPPHPPKADDICCYMYTSGSTG 258
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.6
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -2
Query: 616 PLSLHLVAHNQENL--LLQSIE 557
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,587,605
Number of Sequences: 5004
Number of extensions: 50862
Number of successful extensions: 148
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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