Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2125
         (677 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    36   0.002
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    25   2.2  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    25   2.2  

>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 35.5 bits (78), Expect = 0.002
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 532 VAVEXHNP---IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGR 675
           V V   NP   ++ FE +   + V   V+   Y +PTPIQ    PI ++GR
Sbjct: 162 VRVSGENPPDHVESFERSGLREEVMTNVRKSSYTKPTPIQRYAIPIILNGR 212


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = -1

Query: 320 RRIIAEFVASSKFGTTVSTAIIPVTRHDYFSDLVEDVYLNYGFFLTQ 180
           RR+ A+  A ++F          ++   YF D+V DV L Y  +  Q
Sbjct: 59  RRVRAKSKAMTEFLPLCDVLFNVISLAGYFCDVVFDVVLGYALYERQ 105


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
 Frame = -3

Query: 393 ALQRILFSHQSLQILQ------IYCHRCQTETNYRRIC 298
           A +R+  SHQS  IL+      I CHRC+   + +R C
Sbjct: 180 AQKRMEKSHQSESILRVGPEKKITCHRCRKPGHMKRDC 217


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,473
Number of Sequences: 2352
Number of extensions: 11611
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)