Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2124
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451     28   8.3  
02_04_0061 + 19361562-19363130                                         28   8.3  

>11_06_0048 - 19614636-19616076,19618621-19618992,19619057-19619451
          Length = 735

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 618 YEEVKTELYTKSRSHLPISIVPNTKLHFRNM 526
           YE +KT+ Y  +   +P+S+ PN +  F+NM
Sbjct: 194 YERLKTQFYCFA--FVPVSLTPNMEKIFKNM 222


>02_04_0061 + 19361562-19363130
          Length = 522

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 4/35 (11%)
 Frame = -1

Query: 122 PVQWNPEVS----GSCATTPPARALVRWSAGCXAG 30
           P QW+   S    G    T PA   V WSAG  AG
Sbjct: 97  PAQWSAPASLSFDGDLVLTDPAANKVLWSAGAAAG 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,836,532
Number of Sequences: 37544
Number of extensions: 277071
Number of successful extensions: 548
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)