Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2121
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012...    29   2.8  
02_04_0592 - 24171698-24172285                                         29   2.8  
11_06_0561 - 24984960-24985205,24985283-24985354,24985906-249859...    27   8.5  
10_01_0323 + 3530246-3530446,3531091-3531726,3531860-3532018,353...    27   8.5  

>08_02_0805 +
           21400345-21400701,21400797-21400975,21401223-21401271,
           21401310-21401390,21401988-21402605
          Length = 427

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 123 VNNFTLTAYQGIWYEISKFPTNLR 194
           V N  L  Y G WYEI+ FP+  +
Sbjct: 4   VRNLDLERYMGRWYEIACFPSRFQ 27


>02_04_0592 - 24171698-24172285
          Length = 195

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/63 (23%), Positives = 28/63 (44%)
 Frame = +3

Query: 81  AEVIHEGTCPDLXPVNNFTLTAYQGIWYEISKFPTNLRRTANALHLNTTGX*RXEGKTVH 260
           A  + + +  ++  V    +  Y G WYEI+  P N  +  +      T   R +G TV 
Sbjct: 3   AAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLP-NFFQPRDGRDTRATYALRPDGATVD 61

Query: 261 IID 269
           +++
Sbjct: 62  VLN 64


>11_06_0561 -
           24984960-24985205,24985283-24985354,24985906-24985977,
           24986612-24986782,24987464-24987653,24987733-24987976,
           24988162-24988474,24988687-24989517,24989628-24989672,
           24989677-24989790,24989877-24990371,24990627-24990824,
           24990902-24991357
          Length = 1148

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 253 PCISSTASRSFLXGRLXTDXAIKSXNXQXLL 345
           P IS   S +F  GRL  D  +KS +   LL
Sbjct: 746 PSISQFVSENFYEGRLKDDSTVKSDDYNKLL 776


>10_01_0323 +
           3530246-3530446,3531091-3531726,3531860-3532018,
           3532276-3532569,3557747-3557941,3558875-3559095,
           3559190-3559373,3559797-3559973,3561319-3561824,
           3561880-3562060
          Length = 917

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 255 RSCLXHVTFQLYSGEEHXPFFSDSLEISRF 166
           +SC+  V   L+ G+E+ PF S  +E S F
Sbjct: 831 QSCIMGVLSDLHGGQENIPFTSRDVENSYF 860


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,661,199
Number of Sequences: 37544
Number of extensions: 144084
Number of successful extensions: 237
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)