Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2120
         (370 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical ...    26   7.3  
AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical ...    26   9.7  

>AF039720-9|AAK68360.2|  676|Caenorhabditis elegans Hypothetical
           protein F33D11.9b protein.
          Length = 676

 Score = 26.2 bits (55), Expect = 7.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 79  IED*IQFRRYILKLIDQKYLFYLISRDLHFT 171
           IE+  +    +L+ + Q Y  Y+++ DLHF+
Sbjct: 361 IEEVSRMLNNVLERLHQSYFMYVLADDLHFS 391


>AF101316-3|AAC69232.2|  508|Caenorhabditis elegans Hypothetical
           protein F52F10.2 protein.
          Length = 508

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 114 KYVSPKLNSIFDSQNLRVRIQKYQ*AHL 31
           K   PK  SIF+ + L++RIQK + A++
Sbjct: 257 KTKKPKKPSIFELEGLKMRIQKIKKANI 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,146,559
Number of Sequences: 27780
Number of extensions: 116879
Number of successful extensions: 156
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 524900642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)