Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2118
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    30   0.36 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    27   3.4  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    26   4.5  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.9  
SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr...    25   7.8  

>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 149 YFAKNIVHTSLFSYYISISSGIRKFYESI*NCRSYKSI 36
           Y  K+++  S+F +++S+ S IRK+   +  C + K I
Sbjct: 116 YIWKSLIPESIFYHFVSLQSFIRKYLTDVFYCSAQKVI 153


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 587 HYAPVKCAKIITACCVLHNLAIEFTVPEPEPAEIEN 694
           H+ P+    + T       L +  TVPEP  A IEN
Sbjct: 366 HFGPIGVGALYTCLVARAELEVHSTVPEPNDA-IEN 400


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -3

Query: 675 SGSGTVNSMAKLCNTQHAVMIFAHFTGA-*CNVRSLHKQRHRFFS 544
           SG GT +   KL NTQ   M+    TG+  CN+    KQ + F S
Sbjct: 434 SGGGTADRTIKLWNTQRGSMLHNIDTGSQVCNL-LWSKQTNEFIS 477


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 201 ENMEMTSINASYNSWETILCKKYSSHFLVFLLHLYQLW 88
           ++ + T  +   N  E+IL   YSS+ L     + Q+W
Sbjct: 881 QHRDFTKESKDSNDTESILKNSYSSYVLALAYSVLQIW 918


>SPAC6G10.06 |||amino acid oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 364 VDYAIFSNKSVVGGSSGI 311
           +D  IF +K + GGSSGI
Sbjct: 40  LDIFIFESKEIAGGSSGI 57


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,478
Number of Sequences: 5004
Number of extensions: 67725
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)