Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2118
         (695 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical...    36   0.021
Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical pr...    34   0.11 
AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical ...    29   2.4  
U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome reg...    27   9.7  
U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome reg...    27   9.7  

>AF040643-12|AAB94964.2|  658|Caenorhabditis elegans Hypothetical
           protein F14D2.9 protein.
          Length = 658

 Score = 36.3 bits (80), Expect = 0.021
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
 Frame = +2

Query: 404 WLLGDSGYPQRPWLMTPILDAVEGTPAYKYTAVHGK---TRVAIENTFGRLKNRWRCLCK 574
           ++L D+G+     +M P      G    +  + + K   TRV +EN FG L +++     
Sbjct: 539 FILADNGFGLHKSMMQPYRPTQIGLNPEENISFNFKLSGTRVKVENVFGVLTSKFHIF-- 596

Query: 575 DRTLHYAPVKCAKIITACCVLHNLAI 652
            + L   P     +I A CV+HN+++
Sbjct: 597 QQNLRLEPKTSQALIIAVCVVHNISV 622



 Score = 31.9 bits (69), Expect = 0.45
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = +1

Query: 169 GCIDGCHFHIFTPKKEVEHLYYSRKHFHSLNVQMICDSDCRILNV 303
           G +DG H+    P K    L Y+ K F S N  ++ DSD RIL V
Sbjct: 451 GIVDGKHWRCEHPPKSGA-LNYNYKGFFSFNSLIVSDSDYRILFV 494


>Z81554-4|CAB04511.1|  231|Caenorhabditis elegans Hypothetical
           protein F57G4.9 protein.
          Length = 231

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 18/56 (32%), Positives = 30/56 (53%)
 Frame = +1

Query: 139 FAKYGFPGVIGCIDGCHFHIFTPKKEVEHLYYSRKHFHSLNVQMICDSDCRILNVN 306
           FAK      +G +DG H  I  P      L+++ KHF S  + ++ D+D R++ V+
Sbjct: 20  FAKKHILRCLGSLDGKHIRIKAPPHSGS-LFFNYKHFFSFVLLVVVDADGRVIWVD 74


>AL021175-7|CAE54921.1|  329|Caenorhabditis elegans Hypothetical
           protein Y6E2A.9a protein.
          Length = 329

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 25/37 (67%)
 Frame = +3

Query: 6   TVSKFVKEVPDALVTPAILNTFIKFPYARADRDVIRK 116
           T+S+ +  +PD +++P I+N F +  Y +A R +++K
Sbjct: 233 TLSRILMAMPDMVLSPVIMNRFTRTAYYKA-RPLVQK 268


>U13876-16|AAW88394.1|  420|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform b
           protein.
          Length = 420

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 238 RKHFHSLNVQMICDSDCRIL 297
           RKHFHSL+ +M+    CRI+
Sbjct: 318 RKHFHSLSERMLEKDLCRII 337


>U13876-15|AAA21173.2|  438|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 6, isoform a
           protein.
          Length = 438

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +1

Query: 238 RKHFHSLNVQMICDSDCRIL 297
           RKHFHSL+ +M+    CRI+
Sbjct: 336 RKHFHSLSERMLEKDLCRII 355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,158
Number of Sequences: 27780
Number of extensions: 388351
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1011
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)