Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2116
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   182   3e-47
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   182   3e-47
SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|c...    26   3.7  

>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  182 bits (444), Expect = 3e-47
 Identities = 84/142 (59%), Positives = 99/142 (69%)
 Frame = +1

Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 354
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 355 MCRGGRMFXPTKPWRRWHXXXXXXXXXXXXXXXXXXTGVPTLVQAXGHIIEKIPELPLVV 534
           MCR GRMF PTK WR+WH                  +GVP+L+ A GH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAIASAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 535 XDKXQEINXTXQAXXXLRXLKA 600
            D  Q    T +A   L+ +KA
Sbjct: 155 DDAVQSFQKTKEAVALLKEIKA 176



 Score = 39.9 bits (89), Expect = 3e-04
 Identities = 19/35 (54%), Positives = 24/35 (68%)
 Frame = +3

Query: 69  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRP 173
           ++ ARP VS+Y+ K  +V      LPFVFKAPIRP
Sbjct: 1   MAAARPTVSIYN-KDGSVSSETLALPFVFKAPIRP 34


>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  182 bits (444), Expect = 3e-47
 Identities = 84/142 (59%), Positives = 99/142 (69%)
 Frame = +1

Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 354
           DLV  VH +++KN RQPY VS++AGHQTSAESWGTGRA+ARIPRV GGGTHRSGQ AFGN
Sbjct: 35  DLVRSVHTAVAKNKRQPYAVSEKAGHQTSAESWGTGRALARIPRVGGGGTHRSGQAAFGN 94

Query: 355 MCRGGRMFXPTKPWRRWHXXXXXXXXXXXXXXXXXXTGVPTLVQAXGHIIEKIPELPLVV 534
           MCR GRMF PTK WR+WH                  +GVP+L+ A GH IE+IPE+PLVV
Sbjct: 95  MCRSGRMFAPTKTWRKWHVKVNQNEKRYAISSAVAASGVPSLLLARGHRIEEIPEVPLVV 154

Query: 535 XDKXQEINXTXQAXXXLRXLKA 600
            D  Q    T +A   L+ +KA
Sbjct: 155 DDAVQSFQKTKEAVALLKEIKA 176



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 20/35 (57%), Positives = 24/35 (68%)
 Frame = +3

Query: 69  LSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRP 173
           ++ ARP VS+YS K  +V      LPFVFKAPIRP
Sbjct: 1   MAAARPTVSIYS-KDGSVSSETIALPFVFKAPIRP 34


>SPBC577.12 |mug71||endoribonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 606

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 130 APCTVSLFSEYTDTKGRATDRLISLL 53
           A C V ++SEYT   G ++  L++L+
Sbjct: 490 ADCVVKIWSEYTKNTGESSPVLVALV 515


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,075,123
Number of Sequences: 5004
Number of extensions: 37795
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)