Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2116
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 178 2e-45
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 175 3e-44
10_02_0199 + 6668902-6669293,6669825-6669882 34 0.100
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 33 0.13
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61... 31 0.53
07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988 30 1.6
03_05_0366 - 23505755-23506441 29 2.2
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57... 29 2.8
04_01_0588 + 7657510-7657992,7658397-7658843 29 3.8
03_05_0452 + 24464134-24464442 29 3.8
02_04_0457 + 23093020-23093343,23093798-23093806 29 3.8
10_07_0029 + 12031711-12032464,12044289-12044386 28 5.0
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 28 6.6
07_01_0469 - 3552409-3553368 28 6.6
06_03_1205 - 28406183-28406218,28406462-28406548,28406769-284068... 28 6.6
04_01_0244 - 3194141-3195091,3195301-3195312 28 6.6
03_01_0092 - 731069-731434,731569-733080 28 6.6
11_01_0411 - 3114959-3115000,3115504-3116703 27 8.7
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 27 8.7
05_06_0214 - 26425100-26425922,26426008-26426058,26426183-264262... 27 8.7
03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657 27 8.7
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 178 bits (434), Expect = 2e-45
Identities = 84/142 (59%), Positives = 96/142 (67%)
Frame = +1
Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 354
D+V VH +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGN
Sbjct: 39 DVVRFVHRLLSCNKRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGN 98
Query: 355 MCRGGRMFXPTKPWRRWHXXXXXXXXXXXXXXXXXXTGVPTLVQAXGHIIEKIPELPLVV 534
MCRGGRMF PTK WR+WH T VP+LV A GH IE +PELPLV+
Sbjct: 99 MCRGGRMFAPTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVI 158
Query: 535 XDKXQEINXTXQAXXXLRXLKA 600
D + I T QA L+ + A
Sbjct: 159 SDSAESIEKTSQAIKILKQVGA 180
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 175 bits (425), Expect = 3e-44
Identities = 83/142 (58%), Positives = 94/142 (66%)
Frame = +1
Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 354
D+V H +S N RQPY VS+ AGHQTSAESWGTGRAV+RIPRV GGGTHR+GQGAFGN
Sbjct: 38 DVVTFTHKLLSCNRRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGN 97
Query: 355 MCRGGRMFXPTKPWRRWHXXXXXXXXXXXXXXXXXXTGVPTLVQAXGHIIEKIPELPLVV 534
MCRGGRMF PTK WRRWH T VP+LV A GH IE +PE PLVV
Sbjct: 98 MCRGGRMFAPTKIWRRWHRRVNIRLRRIAVASALAATAVPSLVLARGHRIEGVPEFPLVV 157
Query: 535 XDKXQEINXTXQAXXXLRXLKA 600
D + I T Q+ L+ + A
Sbjct: 158 SDSIESIEKTAQSIKVLKQIGA 179
>10_02_0199 + 6668902-6669293,6669825-6669882
Length = 149
Score = 33.9 bits (74), Expect = 0.100
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +1
Query: 262 AESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGR 372
A+SW TGRA A + R R GG R A N G R
Sbjct: 36 AQSWATGRAAAELGRGRKGGRRRGLAQAAANSGEGNR 72
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 33.5 bits (73), Expect = 0.13
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = -2
Query: 368 PPRHMLPKAP*PDLWVPPP 312
PPRH++P+ P P WVPPP
Sbjct: 308 PPRHLVPRGPAPP-WVPPP 325
>12_01_0073 +
613316-613447,613611-613802,614067-614232,614460-614845
Length = 291
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 175
ASL N I +PTF +G + G S + + GAHT G
Sbjct: 126 ASLDTANNDIPAPTFDLGDLTKSFSNKGLSATDMIALSGAHTIG 169
>07_03_1678 + 28606656-28606784,28607161-28607352,28607431-28607988
Length = 292
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/44 (38%), Positives = 20/44 (45%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 175
ASL N + P+F V G SQA V + GAHT G
Sbjct: 125 ASLALANSDLPPPSFDVANLTASFAAKGLSQADMVALSGAHTVG 168
>03_05_0366 - 23505755-23506441
Length = 228
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 223 PYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGA 345
P C S E + +AES TG A R R+ G T+ + + A
Sbjct: 134 PRCPSDEEDEEEAAESGATGLAHTRAGRIHAGPTNDNDEEA 174
>11_01_0072 +
570345-570476,570640-570831,571095-571260,571487-571872
Length = 291
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 175
ASL N I +PT +G + G S + + GAHT G
Sbjct: 126 ASLDTANNDIPAPTLDLGDLTKSFSNKGLSATDMIALSGAHTIG 169
>04_01_0588 + 7657510-7657992,7658397-7658843
Length = 309
Score = 28.7 bits (61), Expect = 3.8
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Frame = +1
Query: 184 NDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRV---RGGGTHRSGQGAFGN 354
+D+ ++ SR + + ++S+ W G R+ + GGG R G
Sbjct: 201 HDIQWGDNQPSRSSGVLPSSSEWRSSSSRWDLGEITRRMDTLDMQMGGGQQRRPPAEDGL 260
Query: 355 MCRGGRMFXPTKPWRRW 405
P PWRRW
Sbjct: 261 GWASSWFGRPNLPWRRW 277
>03_05_0452 + 24464134-24464442
Length = 102
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 204 VQELEAALLREQGGWSPNQCRIMGYRTCCCPNSA 305
V+++ ++LLR G Q ++G R C C NSA
Sbjct: 21 VEKVRSSLLRVLGLLRGGQASMLGKRACFCSNSA 54
>02_04_0457 + 23093020-23093343,23093798-23093806
Length = 110
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +1
Query: 247 GHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFG 351
G + S W G A A VRGGG RSG G G
Sbjct: 76 GRRRSQPRWRGGAAAAEAD-VRGGGARRSGGGDEG 109
>10_07_0029 + 12031711-12032464,12044289-12044386
Length = 283
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYG 323
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRYHPRRANG 110
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 27.9 bits (59), Expect = 6.6
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +2
Query: 44 ASLK*RNESIGSPTFSVGVFREE*DGAGCSQAPPVRIQGAHTSG 175
ASL+ N ++ +PT V ++ G S V + GAHT G
Sbjct: 197 ASLQGANTNLPAPTSGVATLVQKFRNVGLSAKDMVALSGAHTIG 240
>07_01_0469 - 3552409-3553368
Length = 319
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYG 323
Y+ HDT YR HP R G
Sbjct: 94 YIFHDTAYRFHPRRASG 110
>06_03_1205 -
28406183-28406218,28406462-28406548,28406769-28406830,
28407968-28408184,28408793-28408957,28409145-28409250,
28409830-28410071,28410493-28410605,28410848-28411043,
28411681-28411827,28412034-28412218,28412478-28412592,
28413237-28413728
Length = 720
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 349 RRHPDRTYGYHHHGHAEFGQQHVRYPMI 266
R H D +G+HHH H G H P +
Sbjct: 68 RAHGDHHHGHHHHHHGH-GHSHHHGPEV 94
>04_01_0244 - 3194141-3195091,3195301-3195312
Length = 320
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 373 YVHHDTCYRRHPDRTYG 323
Y+ HDT YR HP R G
Sbjct: 98 YIFHDTAYRFHPRRANG 114
>03_01_0092 - 731069-731434,731569-733080
Length = 625
Score = 27.9 bits (59), Expect = 6.6
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = -2
Query: 365 PRHMLPKAP*PDLWVPPPRTRGIRATARPVP 273
P H++P P P L P P+++ R P
Sbjct: 267 PHHIMPMTPQPQLQPPQPQSKEANTVVRAAP 297
>11_01_0411 - 3114959-3115000,3115504-3116703
Length = 413
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 353 LPKAP*PDLWVPPPRTRGIRATARPVPHDSALV-W*PASL 237
+P P P LW+P P A P+ H S+L W P +L
Sbjct: 276 VPCPPAPPLWLPSPSVPSSLALHVPLFHASSLERWSPTAL 315
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 27.5 bits (58), Expect = 8.7
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = +1
Query: 241 EAGHQTSAESWGTGRAVAR--IPRVRGGGTHRSGQGAFGNMCR---GGRMFXPTKP-WR 399
E G ++ G++V + + R+R H G G+ G++ + GG+M P P WR
Sbjct: 74 EGGGSDKSKGSEVGKSVLQPDVKRIRTEAAHGGGSGSGGSVSKDGTGGKMLRPGFPKWR 132
>05_06_0214 -
26425100-26425922,26426008-26426058,26426183-26426256,
26426344-26426441,26426547-26426671,26426724-26426957,
26426992-26427037,26427101-26427152,26427331-26427367,
26427521-26427637,26428287-26428352,26428439-26428518,
26429102-26429311,26429650-26429739,26430093-26430182,
26430280-26430411,26430876-26431094,26431203-26431286,
26431543-26431656,26431857-26431914,26432535-26432602,
26432847-26432962,26433495-26433574,26433839-26433912
Length = 1045
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = -1
Query: 153 IRTGGAWLHPAPSHSSLN-TPTLKVGLPIDSF 61
+R+ WL P P+H ++N L + +P+D F
Sbjct: 865 LRSYITWLKPTPAHVAMNPAEALAMQIPVDHF 896
>03_01_0499 - 3766713-3767159,3767742-3767813,3768004-3768657
Length = 390
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/34 (29%), Positives = 14/34 (41%)
Frame = -3
Query: 340 PDRTYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 239
P + +HHHGH + + H G PP
Sbjct: 33 PQEHHHHHHHGHHGHHHEQQQQQQHHHHLGPPPP 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,532,749
Number of Sequences: 37544
Number of extensions: 343168
Number of successful extensions: 1220
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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