Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2116
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   159   2e-39
Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical pr...    31   0.83 
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   7.7  
U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  159 bits (385), Expect = 2e-39
 Identities = 74/138 (53%), Positives = 92/138 (66%)
 Frame = +1

Query: 175 DLVNDVHVSMSKNSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 354
           DLV+ +   + +N RQ + V+ +AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGN
Sbjct: 34  DLVSFIADQVRRNRRQAHAVNTKAGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGN 93

Query: 355 MCRGGRMFXPTKPWRRWHXXXXXXXXXXXXXXXXXXTGVPTLVQAXGHIIEKIPELPLVV 534
           MCRGG MF P K +RRWH                  +G+P L+QA GH+I+++ E+PLVV
Sbjct: 94  MCRGGHMFAPLKVFRRWHRNVNIAQKRYAVSSAIAASGIPALLQARGHVIDQVAEVPLVV 153

Query: 535 XDKXQEINXTXQAXXXLR 588
            DK +    T +A   LR
Sbjct: 154 SDKVESFRKTKEAVVFLR 171



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 19/32 (59%), Positives = 22/32 (68%)
 Frame = +3

Query: 78  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRP 173
           ARPLV+VY EK E  Q   + LP VF+ PIRP
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRP 33


>Z69302-6|CAL36504.1|  472|Caenorhabditis elegans Hypothetical
           protein F40F8.11 protein.
          Length = 472

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 3/64 (4%)
 Frame = +1

Query: 211 NSRQPYCVSKEAGHQTSAESWGTGRAVARIPRVRGGGTHR---SGQGAFGNMCRGGRMFX 381
           N R    V K   H+    SW T     +  R  GGG  R   SG    G   RGGR   
Sbjct: 137 NKRGTKGVQKMPNHRLEGNSWETNGLQNQTARGGGGGRGRGRGSGGRGRGGFNRGGRFNG 196

Query: 382 PTKP 393
             KP
Sbjct: 197 APKP 200


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 126 PAPSHSSLNTPTLKVGLPIDSFRYFSEAIPPKYT 25
           P  S +S N PT+K+ L I+   YF     PK T
Sbjct: 184 PTTSSTSTNAPTIKITLNIND-AYFDSNCAPKCT 216


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 249 SPNQC--RIMGYRTCCCPNSAC 308
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +3

Query: 249 SPNQC--RIMGYRTCCCPNSAC 308
           S N+C  +  G+ TCCC + AC
Sbjct: 866 STNRCHQQEQGFETCCCDSDAC 887


>U42439-8|AAM98032.1|  431|Caenorhabditis elegans Hypothetical
           protein F19C7.8a protein.
          Length = 431

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -3

Query: 331 TYGYHHHGHAEFGQQHVRYPMIRHWFGDQPP 239
           T+GYHH+ HA   Q  +   + R      PP
Sbjct: 67  THGYHHNPHARLSQPDIHSAIYRPHHYYSPP 97


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -3

Query: 367 HHDTCYRRHPDRTYGYHHHGHAEFGQQH 284
           HHD  +++H  + +  HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,889,604
Number of Sequences: 27780
Number of extensions: 239617
Number of successful extensions: 709
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)