Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2111
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   6.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.4  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   6.4  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    25   6.4  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    25   6.4  

>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/59 (25%), Positives = 23/59 (38%)
 Frame = +2

Query: 302 SKGTHGVXANHGISTHXVPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEETP 478
           SK T  +  +H        T    + ++      TP QR+A T   P   A  ++ E P
Sbjct: 292 SKSTDNIIRSHSPVLLTPQTLSTSETKHIRPNNSTPYQRRAETSTKPKAVATPQKVEAP 350


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 341 STHXVPTHMVPDHEYCETTAQTPSQRQ--AI-TELAPTQPAVDEEEETPEIDIMIN 499
           ST    T   P  E  ET  + P  +   A+ TE + T+P+   EE TP   +  N
Sbjct: 422 STPKEETEESPSTELPETGKEQPPNKAEPAVPTEASSTKPSEAAEESTPRFSVRPN 477


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 392 SRNIHGLAPYVLGXCVWI 339
           SR+IH  +P+ LG  +W+
Sbjct: 360 SRDIHNSSPFKLGDSIWL 377


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +2

Query: 335 GISTHXVPTHMVPDHE 382
           GI+TH VP HM P  E
Sbjct: 231 GIATHFVPKHMFPHLE 246


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 440 PTQPAVDEEEETPEIDIM 493
           P QP  DEEEE  E D M
Sbjct: 169 PVQPDADEEEEEEEADEM 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,101,961
Number of Sequences: 5004
Number of extensions: 36439
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)