Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2111
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0328 + 24441747-24442073,24442205-24442327,24442947-244430...    30   1.2  
02_01_0097 + 712586-713035,714120-715080,715577-715746                 29   2.2  

>04_04_0328 +
           24441747-24442073,24442205-24442327,24442947-24443012,
           24443155-24443223,24443263-24443307
          Length = 209

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 275 IQENGIKELSKGTHGVXANHGISTHXVPTH 364
           I E+GI +L+   HG   +HG S   V TH
Sbjct: 30  ISEDGIPDLTDSIHGAAHHHGRSEENVSTH 59


>02_01_0097 + 712586-713035,714120-715080,715577-715746
          Length = 526

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 235 QFISALRGGHGDAHPREWY*RAEQGHPRGXGKPWHIHTQXPNTYG 369
           +FI   +GG GD   + W  R   G P   G+    H   P   G
Sbjct: 464 KFIPGPKGGGGDGRGKGWRKRRTGGRPAAGGRGCGAHAAAPRVGG 508


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,332,105
Number of Sequences: 37544
Number of extensions: 230854
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)