Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2111
         (600 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    28   0.20 
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    24   4.3  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   4.3  
CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.          23   7.5  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 28.3 bits (60), Expect = 0.20
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 212 KNNXEKYISLYQHSVXV-MATLIQENGIKELSKGTHGVXANHGISTHXVPT 361
           K+N   +I   Q    V M  ++  N I E + G H   ++HG+S +  PT
Sbjct: 710 KHNDNPFIEPAQTQTVVDMKDVMVLNDIIEQAAGRHSRASDHGVSVYYFPT 760


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 371  PDHEYCETTAQTPSQRQAITEL 436
            PD ++C  T Q  S+ QA  EL
Sbjct: 1087 PDRQFCFLTPQDMSEVQATAEL 1108


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = -1

Query: 147 FVSILNDXXTSVNIKETSY---LQLFTEKNQKLFHILSSTAMFPERMK 13
           F  +L     S  I  T +   L+LF E  QK+ H+L +   F   +K
Sbjct: 695 FGYLLKSEEISTRITHTFFMDDLKLFAETVQKMHHLLKNVQGFSNDIK 742


>CR954256-4|CAJ14145.1| 1494|Anopheles gambiae tensin protein.
          Length = 1494

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/35 (28%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +2

Query: 332  HGISTHXVPTHMV-PDHEYCETTAQTPSQRQAITE 433
            H I+   +P  ++ PD +  +   QTP+Q+Q + +
Sbjct: 1310 HSITPLALPCRLIIPDMDLQQMEHQTPAQQQLLQQ 1344


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 541,167
Number of Sequences: 2352
Number of extensions: 9179
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 58029966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)