Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2111
(600 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein. 51 1e-06
AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p pro... 51 1e-06
AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like fac... 51 1e-06
AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box bin... 51 1e-06
AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-P... 51 1e-06
AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-P... 51 1e-06
X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related fa... 29 3.7
X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related fa... 29 3.7
AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p pro... 29 3.7
AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA... 29 3.7
AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-P... 28 8.4
>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
Length = 1715
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 1274 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 1311
>AY069554-1|AAL39699.1| 632|Drosophila melanogaster LD27895p
protein.
Length = 632
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 228
>AJ238442-1|CAB41475.1| 537|Drosophila melanogaster TBP-like factor
protein.
Length = 537
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 96 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 133
>AF136569-1|AAD28784.1| 632|Drosophila melanogaster TATA box
binding protein-relatedfactor 2 protein.
Length = 632
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 228
>AE014298-1172|AAF46368.2| 632|Drosophila melanogaster CG18009-PD,
isoform D protein.
Length = 632
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 228
>AE014298-1171|AAF46369.3| 632|Drosophila melanogaster CG18009-PA,
isoform A protein.
Length = 632
Score = 50.8 bits (116), Expect = 1e-06
Identities = 25/41 (60%), Positives = 28/41 (68%)
Frame = +2
Query: 446 QPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQIALNGVN 568
QP D E E +DI+IN V CSFSV CHL LR+IAL G N
Sbjct: 191 QPIADNEHE---LDIVINNVVCSFSVGCHLKLREIALQGSN 228
>X70838-1|CAA50186.1| 224|Drosophila melanogaster TBP-related
factor protein.
Length = 224
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 434 LAPTQPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQI 550
L P QP E + + +I + + +FSV C L+L+ I
Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAI 69
>X70837-1|CAA50185.1| 224|Drosophila melanogaster TBP-related
factor protein.
Length = 224
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 434 LAPTQPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQI 550
L P QP E + + +I + + +FSV C L+L+ I
Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAI 69
>AY128483-1|AAM75076.1| 224|Drosophila melanogaster RE61442p
protein.
Length = 224
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 434 LAPTQPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQI 550
L P QP E + + +I + + +FSV C L+L+ I
Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAI 69
>AE014134-1392|AAF52600.1| 224|Drosophila melanogaster CG7562-PA
protein.
Length = 224
Score = 29.5 bits (63), Expect = 3.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 434 LAPTQPAVDEEEETPEIDIMINXVXCSFSVKCHLNLRQI 550
L P QP E + + +I + + +FSV C L+L+ I
Sbjct: 31 LQPQQPVALVEPKDAQHEIRLQNIVATFSVNCELDLKAI 69
>AE014297-3684|AAF56376.1| 2768|Drosophila melanogaster CG13648-PA
protein.
Length = 2768
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +2
Query: 353 VPTHMVPDHEYCETTAQTPSQRQAITELAPTQPAVDEEEET 475
VPT + P E T++ TP + T +P D E+ET
Sbjct: 1648 VPTTVAPAGEKIPTSSITPDEEPTATSAPVAKPDEDVEKET 1688
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,444,302
Number of Sequences: 53049
Number of extensions: 406838
Number of successful extensions: 1135
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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