Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2111
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical pr...    35   0.039
AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like fact...    35   0.039
AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like fact...    35   0.039
Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>Z81079-5|CAB03082.2|  505|Caenorhabditis elegans Hypothetical
           protein F39H11.2 protein.
          Length = 505

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 425 ITELAPTQPAVDEEEETPE---IDIMINXVXCSFSVKCHLNLRQIALNGVN 568
           + ++ P   +   EE  P+   IDI I  V C++++  H++LR++A+N  N
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHN 291


>AJ238443-1|CAB41469.1|  454|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 454

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 425 ITELAPTQPAVDEEEETPE---IDIMINXVXCSFSVKCHLNLRQIALNGVN 568
           + ++ P   +   EE  P+   IDI I  V C++++  H++LR++A+N  N
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHN 291


>AF228692-1|AAF59926.1|  505|Caenorhabditis elegans TBP-like factor
           protein.
          Length = 505

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
 Frame = +2

Query: 425 ITELAPTQPAVDEEEETPE---IDIMINXVXCSFSVKCHLNLRQIALNGVN 568
           + ++ P   +   EE  P+   IDI I  V C++++  H++LR++A+N  N
Sbjct: 241 VPDVPPEGTSAANEEPMPDDGDIDIQIRNVVCNYTLPLHIDLRKLAMNTHN 291


>Z34533-9|CAA84303.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 153 NFFVSILNDXXTSVNIKETSYLQLFTEKNQKLFHILSSTA 34
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


>Z30973-5|CAA83224.2|  368|Caenorhabditis elegans Hypothetical
           protein B0285.10 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = -1

Query: 153 NFFVSILNDXXTSVNIKETSYLQLFTEKNQKLFHILSSTA 34
           +F +  L D   +VN  E +  ++   ++  +FH+ SST+
Sbjct: 24  DFGIDFLGDEWKNVNRSEVTVTRILGGQSNHMFHVTSSTS 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,778,581
Number of Sequences: 27780
Number of extensions: 213480
Number of successful extensions: 504
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)