Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2110
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 29 0.94
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 2.2
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.9
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 26 5.0
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe... 26 5.0
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos... 26 5.0
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 5.0
SPBC800.10c |||EPS15 repeat family actin cortical patch componen... 26 6.6
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 25 8.7
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 28.7 bits (61), Expect = 0.94
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = -3
Query: 355 SRRTTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFL 176
S ++ ++ S+ + P + S + SS+ F PS+ +S T S + + + L
Sbjct: 216 SSHSSSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAAL 275
Query: 175 HSVLKSTSSHCSLN 134
S+H SLN
Sbjct: 276 ALNASKASNHTSLN 289
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = -2
Query: 440 FSEQRNIHQTRIWSVEDRPVFTPSCPAEKPKNNANDDEH 324
F + N H R+ S P+ PS A ++N+++H
Sbjct: 342 FIHKNNTHSNRVLSQSSGPIVRPSLLAALDFRSSNEEQH 380
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 346 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T+ TN S +PT + ST + + T V T P T TS T
Sbjct: 268 TSSTDTNSSPLPTTSTSCTTSTSIPPTGNSTTPVTPTVPPTSTSST 313
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -3
Query: 346 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISN 200
TT T+ S + T TP+ + + +T + + + P T ++ TIS+
Sbjct: 529 TTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISS 577
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/44 (40%), Positives = 23/44 (52%)
Frame = -3
Query: 346 TTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTS 215
TT + + T T GST+ +STG + V T PSTVTS
Sbjct: 213 TTAVTVTATETYTVTATNGGSTI---TSTGASTVTSTQPSTVTS 253
>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 560
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -2
Query: 398 VEDRPVFTPSCPAEKPKNNANDDEHQRHADEDSNHRGINGPG 273
+ED P++ P A+KP++ ++++ E N + I G G
Sbjct: 290 LEDEPLYIPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAG 331
>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
orphan|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1563
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 863 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 907
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 907 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 951
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 951 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 995
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 995 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1039
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 1039 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1083
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = -3
Query: 343 TQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T T + T T + A T +V +TG+TG + + +GT
Sbjct: 1083 TSTGTTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 1127
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -3
Query: 331 TNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGT 209
T + T T + A T +V +TG+TG + + +GT
Sbjct: 823 TTTVVIQTPTTVTATETDIVTVTTGYTGTETSTVTVTPTGT 863
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 334 MTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPST-VTSGTISN 200
+T+ +A+ T PI S+ +V+SST T + ST +TS T+ N
Sbjct: 1644 ITSSTALNTSPPIT--SSTVVNSSTPITSSTVVNTSTPITSSTVVN 1687
>SPBC800.10c |||EPS15 repeat family actin cortical patch component
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1116
Score = 25.8 bits (54), Expect = 6.6
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 3/95 (3%)
Frame = -3
Query: 337 MMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFLHSVL-- 164
+M ++PT P + + + + + T PS VTSGT L + L
Sbjct: 348 LMQKSKSVPTSIPSVVPANISSPNPNPTLAPNPTGPSRVTSGTEDLLSLDATPFSPTLAP 407
Query: 163 KSTSSHCSLNKQDSL-MLAGFPHLSKWLLMGTSGW 62
+ TSS+ + + + A FP +S L T G+
Sbjct: 408 QHTSSNATKHSAPPVTKSAPFPVVSPLQLNHTPGF 442
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 24 DAVCDESXKVCTCHPDVPISNHFDKCGKPASINESCLFNEQ 146
D+V +ES + PD +F CG P + S L E+
Sbjct: 114 DSVFNESKS--SSPPDAHTDKYFTPCGSPTKLIHSTLLEER 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,704,191
Number of Sequences: 5004
Number of extensions: 52214
Number of successful extensions: 194
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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