Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2110
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0093 + 13536684-13536782,13537055-13537057,13537626-135376... 32 0.56
08_01_0175 - 1497700-1498459,1498546-1499939 31 1.3
02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000... 31 1.3
01_01_0323 + 2598850-2598924,2599756-2600844,2601352-2602589,260... 30 1.7
07_03_0955 + 22867448-22868248 29 3.0
01_06_0853 - 32468690-32468857,32469398-32469535,32469930-324701... 29 5.2
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 28 6.9
07_03_0497 + 18777377-18777592,18777691-18778512 28 6.9
11_08_0008 + 27591454-27592154,27595078-27595253,27595774-275959... 28 9.1
>12_02_0093 +
13536684-13536782,13537055-13537057,13537626-13537654,
13539481-13539572,13539979-13540049,13540178-13540266,
13540896-13541019,13541111-13541394,13541831-13541960,
13542482-13543111
Length = 516
Score = 31.9 bits (69), Expect = 0.56
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +3
Query: 21 PDAVCDESXKVCTCHPDVPISNHFDKCGK--PASINESCLFNEQCEDVDFKTECKNE 185
P++ S C CH + P+ N DKC P + L NE+ EDVD KT K E
Sbjct: 452 PESFYTNSWPECFCHMN-PM-NPSDKCPSDDPHDVLGGQLQNEEIEDVDLKTTDKIE 506
>08_01_0175 - 1497700-1498459,1498546-1499939
Length = 717
Score = 30.7 bits (66), Expect = 1.3
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = -3
Query: 370 LALLKSRRTTQMMTNISAMPTRTPIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQA 191
+A+L+S ++ +PT P +A L SSTG T S+ TSG I++ +
Sbjct: 636 MAMLQSSGQLPVLPAKMPVPTYAPPVASVEGLFTSSTGMLSSSATQSSSTTSGYITHTSS 695
Query: 190 QRSFLHSVLKSTSS 149
+ S SS
Sbjct: 696 SSNTSTSAGSKDSS 709
>02_04_0205 +
20897376-20897597,20898623-20898774,20899874-20900084,
20900734-20900872,20901310-20901341,20901471-20901557,
20901720-20901932,20903687-20903869,20903979-20904084,
20905042-20905064,20905511-20905570
Length = 475
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = -2
Query: 395 EDRPVFTPSCPAEKPKNNANDDEHQ--RHADEDSNHRGI 285
E+ V T CP KP +NA +HQ R A+E H +
Sbjct: 165 EETRVVTTDCPGTKPSDNAESLKHQGNRLAEEGKYHEAL 203
>01_01_0323 +
2598850-2598924,2599756-2600844,2601352-2602589,
2602637-2602810,2603032-2603098,2603735-2603757,
2603899-2604001,2604087-2604848,2605098-2605292,
2605496-2606115,2606429-2606480,2606558-2607197,
2608366-2608574,2608660-2609189,2609500-2609566,
2609651-2609728,2610415-2610483,2610569-2610643
Length = 2021
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 241 ITAPSTVTSGTISNLQAQRSFLHSVLKSTSSHCSLNKQDSLMLAGFPHLSKWLLM 77
+T ST T +I + + QR + SS C+L +DS + G P + WL++
Sbjct: 491 VTICSTATK-SIESSENQRLAKVGRVSQNSSVCNLGSKDSSSVGGLPPPAAWLIL 544
>07_03_0955 + 22867448-22868248
Length = 266
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 301 PIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFLH 173
P++AG+TV DS + +H+ P+ + S + AQ H
Sbjct: 8 PLVAGATVSSDSDSDSDDLHLLLPNLLPSAATAASDAQLHHFH 50
>01_06_0853 -
32468690-32468857,32469398-32469535,32469930-32470145,
32470280-32470356,32470483-32470549,32471264-32471866,
32471971-32472258
Length = 518
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 231 GAVICTPVKPVDESTRTVDPAMIGVLVGMA 320
GA TP +PV S R V+ I V++G+A
Sbjct: 41 GAAAATPPEPVSPSARLVEDFFIVVVIGIA 70
>11_06_0151 - 20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 28.3 bits (60), Expect = 6.9
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = -3
Query: 445 LDSLSKETFI--RRGFGVLKIVLFSRHLALLKS--RRTTQMMTNISAMPTRTPIIAGSTV 278
L LSK+ ++ R FGV + + FSRH L K+ T Q+ T+ PT + G
Sbjct: 1139 LTILSKKLYLMSRIKFGVTRSIFFSRHYDLNKAPVHLTLQLPTSPMDNPTPSSSSGGGGA 1198
Query: 277 LVDSSTGFTGVHITAPST 224
++ T+P+T
Sbjct: 1199 AAAANASSDEHRKTSPAT 1216
>07_03_0497 + 18777377-18777592,18777691-18778512
Length = 345
Score = 28.3 bits (60), Expect = 6.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = -3
Query: 301 PIIAGSTVLVDSSTGFTGVHITAPSTVTSGTISNLQAQRSFLHSVLKSTS 152
P STV V S+ G+ +H T +T +GT + FLH+ +T+
Sbjct: 3 PFPENSTVCVGSTDGWLALHRTDAATTAAGT--KTKRHTFFLHNPFTATT 50
>11_08_0008 +
27591454-27592154,27595078-27595253,27595774-27595968,
27598124-27599184
Length = 710
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 6 ADCNFPDAVCDESXKVCTCHPDV 74
AD N+ D VC ++ K CT DV
Sbjct: 586 ADMNYVDPVCIQTGKYCTMESDV 608
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,575,374
Number of Sequences: 37544
Number of extensions: 378546
Number of successful extensions: 1286
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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