Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2110
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.0  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.3  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = -2

Query: 395 EDRPVFTPSCPAEKPKNNANDDEHQ---RHADEDSNHRGINGPGRLIDWFYGSTYNCSVD 225
           E +P      P+ +P +N  +   Q   R A +DS     N  GR++  F G+T  C V 
Sbjct: 15  EQQPSGDILSPSSEPLDNDKEQSAQVCYRGAPQDSE----NLLGRVLAEFDGTTVLCRVC 70

Query: 224 GD 219
           GD
Sbjct: 71  GD 72


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -3

Query: 616 YLLLNHDESXRIFGVTDD-FGEVV---LDSASGVLTPAGSPVEKAGA 488
           +++L H E   IFG  D+   E V   L+S   V+   G  +E+  A
Sbjct: 89  WVILGHSERRNIFGENDELIAEKVAHALESGLKVIACIGEKLEEREA 135


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 448 CYTLRTGRGSRVSMRPPSRQASQQELRPHSPS 543
           C  +RT    ++S    + Q S  EL+P+  S
Sbjct: 455 CNLMRTMNRKQISELESNMQISPNELKPNDKS 486


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 491 RMLTLEPRPVLRV*QLRFSE 432
           ++LT+E +P + V ++ FSE
Sbjct: 415 KVLTIEEKPFVYVREIAFSE 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,433
Number of Sequences: 438
Number of extensions: 3749
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)