Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2109
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 1.8
11_02_0096 - 8261667-8262083 29 3.1
08_02_0236 + 14652034-14652225,14652311-14652527,14652561-146532... 29 4.1
08_01_0985 - 9960064-9960249,9960327-9960419,9960518-9960578,996... 29 4.1
03_05_0594 + 25981587-25981826,25981912-25982160,25982257-259838... 29 4.1
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859... 29 5.4
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 29 5.4
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 28 7.1
12_01_0773 - 7039294-7039422,7039440-7039479,7039557-7039649,703... 28 7.1
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47... 28 7.1
07_03_0725 + 20991640-20992471,20993308-20993418,20993542-209937... 28 7.1
03_05_0791 + 27736978-27737217,27737648-27739191,27739512-277397... 28 7.1
03_05_0567 - 25672780-25672965,25673043-25673135,25673237-256732... 28 7.1
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991... 28 7.1
08_01_1063 + 10839860-10840099,10840185-10840895 28 9.4
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 30.3 bits (65), Expect = 1.8
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = -3
Query: 336 VFTEISSGEKCCTSRLTWNLSLSAFMLEPRSRD 238
+F ++S GE+C ++ T+N+ +SA + R+ D
Sbjct: 401 LFEKMSKGEECLPNQDTYNIIISAMFMRKRAED 433
>11_02_0096 - 8261667-8262083
Length = 138
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/42 (35%), Positives = 15/42 (35%)
Frame = +3
Query: 480 RGSHHHRAGGRYPTPSRGEKKXAHRTDRSRSQGDQGPERGNP 605
RG H GGR P P R S GP RG P
Sbjct: 13 RGRHPRGPGGRRPRPVESGASSGATRRRESSDTGLGPRRGRP 54
>08_02_0236 +
14652034-14652225,14652311-14652527,14652561-14653208,
14653374-14654364,14654532-14654703
Length = 739
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P + RRS+ + ++
Sbjct: 40 SPSPKRRKKGDGEEGNKDYIPPIKGETAPRRSKRQPKK 77
>08_01_0985 -
9960064-9960249,9960327-9960419,9960518-9960578,
9960667-9960774,9960921-9961106,9961427-9962421,
9962626-9962988,9963085-9963333,9963419-9963574
Length = 798
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D+ +G ++ P RRS+ + ++
Sbjct: 28 SPSPKRRKKGDSEEGDKDYIPPKEGETVPRRSKRQPKK 65
>03_05_0594 +
25981587-25981826,25981912-25982160,25982257-25983818,
25984139-25984390,25984471-25984581,25984669-25984729,
25984829-25984921,25984999-25985184
Length = 917
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P + RRS+ + ++
Sbjct: 56 SPSPKRRKKDDGEEGDKDYIPPKKGETAPRRSKGQPKK 93
>07_03_0316 +
16684100-16684339,16684425-16685132,16685241-16685939,
16685992-16686053,16686096-16686368,16686622-16686873,
16686954-16687064,16687152-16687212,16687312-16687404,
16687482-16687667
Length = 894
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK+ D +G ++ P R+S+ + ++
Sbjct: 56 SPSPKRRKMGDCAEGDKDYIPPKEGETAPRQSKRQPKK 93
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.7 bits (61), Expect = 5.4
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +2
Query: 458 ESAAVIR---TGFSPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRAREPXMP-KISX 625
+ AAV R G +PRR P+A GR + ARRS++ R P P ++S
Sbjct: 34 DDAAVRRKAAAGSPATPRRHPSPNA--GRSSAAAAEAAGSQARRSQSTERRPATPSRLSP 91
Query: 626 GG 631
GG
Sbjct: 92 GG 93
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P RRS+ + ++
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKQQPKK 93
>12_01_0773 -
7039294-7039422,7039440-7039479,7039557-7039649,
7039900-7040010,7040091-7040342,7040407-7040903,
7040923-7041777,7041883-7042143,7042183-7042551,
7042637-7042876
Length = 948
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P RRS+ + ++
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKRQPKK 93
>09_01_0027 -
469856-470773,470780-471261,471296-471408,471453-472003,
472089-472328
Length = 767
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D+ +G ++ P RRS+ + ++
Sbjct: 56 SPSPKRRKKGDSEEGDKDYIPPKEGETAPRRSKWQPKK 93
>07_03_0725 +
20991640-20992471,20993308-20993418,20993542-20993739,
20993860-20993891,20993943-20994153,20994806-20995043,
20995507-20995657,20996171-20996533
Length = 711
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +2
Query: 131 DQDFGLALTPNDMLAAVACPVLSEDYFRPWRQLAAASRD 247
D+ FGLAL DM A AC F+ R L RD
Sbjct: 75 DRVFGLALCRGDMRDAAACAGCVSGAFQRLRALCGRDRD 113
>03_05_0791 +
27736978-27737217,27737648-27739191,27739512-27739763,
27739844-27739954,27740042-27740102,27740373-27740558
Length = 797
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTR 592
SPSP+RRK D +G ++ PS P + R
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPSKEGFPEGSEATVR 90
>03_05_0567 -
25672780-25672965,25673043-25673135,25673237-25673297,
25673385-25673495,25673640-25673825,25673909-25675287,
25675393-25675776,25675813-25676061,25676147-25676386
Length = 962
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRAREPXMPK 616
SPSP+RRK D +G ++ P RRS+ + ++ K
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKWQPKKKVTSK 98
>02_03_0365 -
18198669-18198809,18198887-18198979,18199078-18199138,
18199291-18199336,18199417-18199682,18199766-18200744,
18201012-18201564,18201661-18201909,18201995-18202234
Length = 875
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P RRS+ + ++
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKRQPKK 93
>08_01_1063 + 10839860-10840099,10840185-10840895
Length = 316
Score = 27.9 bits (59), Expect = 9.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 488 SPSPRRRKVPDAVKGREEXCPSHRPVPFARRSRTRARE 601
SPSP+RRK D +G ++ P RRS+ + ++
Sbjct: 56 SPSPKRRKKGDGEEGDKDYIPPKEGETAPRRSKWQPKK 93
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,708,722
Number of Sequences: 37544
Number of extensions: 419825
Number of successful extensions: 1476
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1476
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -