Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2108
         (750 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Re...    37   0.61 
UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2; ...    33   5.7  
UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein precur...    33   7.5  

>UniRef50_Q75C93 Cluster: ACR023Wp; n=1; Eremothecium gossypii|Rep:
           ACR023Wp - Ashbya gossypii (Yeast) (Eremothecium
           gossypii)
          Length = 769

 Score = 36.7 bits (81), Expect = 0.61
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 6   PRPSDPKPTSPARGAPCRPTNEALARRGRH 95
           P P DP+PTSPA+ A  RP++ +L   G H
Sbjct: 550 PPPGDPQPTSPAQNATRRPSDASLGYPGSH 579


>UniRef50_A5NWR2 Cluster: Putative uncharacterized protein; n=2;
           Methylobacterium sp. 4-46|Rep: Putative uncharacterized
           protein - Methylobacterium sp. 4-46
          Length = 206

 Score = 33.5 bits (73), Expect = 5.7
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 3   LPRPSDPKPTSPARGAPCRPTNEA--LARRGRHGTTVAYIVDDSGS 134
           LPRPS   PT P R  P  P   A  LARR  H    ++++ + GS
Sbjct: 142 LPRPSAATPTKPERPPPRTPAPSAPQLARRD-HPAEASFLIGEKGS 186


>UniRef50_Q01ZQ0 Cluster: Putative uncharacterized protein
           precursor; n=1; Solibacter usitatus Ellin6076|Rep:
           Putative uncharacterized protein precursor - Solibacter
           usitatus (strain Ellin6076)
          Length = 697

 Score = 33.1 bits (72), Expect = 7.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +3

Query: 9   RPSDPKPTSPARGAPCRPTNEALARRGRHGTTVAYIVDDSG 131
           R +  KP +P +G P  P+    AR  +   TVA +VDD G
Sbjct: 79  RATSAKPAAPVKGVPPPPSPPMAARPKQIRRTVALVVDDLG 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 629,979,496
Number of Sequences: 1657284
Number of extensions: 11031699
Number of successful extensions: 28039
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27928
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)