Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2107
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    29   0.85 
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    28   1.5  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    27   2.0  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    27   2.0  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    27   2.6  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    26   4.5  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   4.5  
SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   4.5  
SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces po...    26   6.0  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    25   7.9  

>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 21/57 (36%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = -2

Query: 519 PLGTWSPCVLEVHR--CVRDELVTP-LISVHLCEPAPASVLNTGSRLETRPPCPARI 358
           P G W PC L  H    V   + T    + H+CE A   V+N   RL    P PA I
Sbjct: 96  PEGGW-PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYRLAPEDPFPACI 151


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/44 (22%), Positives = 21/44 (47%)
 Frame = +2

Query: 563 CSTSASPGSTSWTSKYRTTFRALWRYMYHMYQLDAFTQKLSRRP 694
           C+      + SW   +++  +  W+    M ++ AFT +L + P
Sbjct: 631 CNLILRHDAASWAVTFQSLIKESWKEQIDMQRIPAFTAQLIKEP 674


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 164 LYLLAELKT-ISLKVTTVDMQKPPPDFRTNFEATHPPILIDNGLAILENEKIERHIMK 334
           +++L ELK    +KV      + PP +         PI++D+G+  +E+  I  H+++
Sbjct: 16  VWMLEELKVPYEIKVYDRVDGRAPPAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVR 73


>SPCC550.03c |||RNA helicase involved in mRNA
           catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 372 KEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRFLTGD 524
           KEV  LIE+L SK     +RK   K+  +R     I  L +  +   + G+
Sbjct: 101 KEVPELIEDLNSKNSSSFLRKPSSKNEFVRGSTSNIPFLADDSDVDAIAGE 151


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 658 LIHVIHVTPQSTERRPVFRSPRSTSRRRGCAATSXISSQSKQHIVSPVR 512
           L+ ++++ PQ T   PV RS     +   CA  S +S+ S +    P++
Sbjct: 229 LLSIMYMIPQITHCTPVSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIK 277


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 658 LIHVIHVTPQSTERRPVFRSPRSTSRRRGCAATSXISSQSKQHIVSPVR 512
           L+ ++++ PQ T   PV RS     +   CA  S +S+ S +    P++
Sbjct: 229 LLSIMYMIPQITHCTPVSRSVMYGIQNGFCAVLSTLSTFSNELHTMPIK 277


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +3

Query: 255 KRHTRPY*STMGWRYLRTRKSNGTS*SPCQGDTTLFVQDKEVASLIENLYSKLKLVLVRK 434
           K  TR    T+ WR L ++ +NG      +  T L  ++K V+++ +   + +   +++K
Sbjct: 353 KESTRTVFETVPWRILSSQATNGLI-ELVRSKTRLTSKNKTVSNVYDESNATISSGVMQK 411

Query: 435 DEQKS 449
           D +K+
Sbjct: 412 DLRKT 416


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 634 PQSTERRPVFRSPRSTSRRRG 572
           PQSTERRPV RS     +  G
Sbjct: 208 PQSTERRPVRRSESRLKQTNG 228


>SPCC191.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 658 LIHVIHVTPQSTERRPVFRSPRSTS 584
           L+H   V+P S  R P F SPR  S
Sbjct: 8   LVHCCWVSPPSLTRLPAFPSPRILS 32


>SPAC4A8.07c |||sphingoid long chain base |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 458

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +3

Query: 363 VQDKEVASLIENLYSKLKLVLVR-KDEQKSAALRAHLGRIDGLL 491
           + + E   +  + +S  ++VL R KD  KS A    +G  DG+L
Sbjct: 124 IWESEAEPVFSSAHSICEVVLTRRKDHAKSIAKNLDVGSYDGIL 167


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -2

Query: 423 APASVLNTGSRLETR----PPCPARIRLCPPGT 337
           APA   +T + L  R    PP P+R++  PP T
Sbjct: 15  APARSASTAAALPPRTMAPPPAPSRVQQAPPPT 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,870,801
Number of Sequences: 5004
Number of extensions: 57788
Number of successful extensions: 183
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)