Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2107
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1820 + 40120861-40120863,40122484-40122612,40122710-401228... 30 1.5
06_03_1516 + 30712208-30712780,30712984-30713139,30713819-307139... 29 3.5
04_01_0614 + 8049199-8049579 29 3.5
09_04_0597 - 18859601-18859818,18860914-18861083,18861250-188613... 29 4.7
09_03_0110 + 12432562-12432801,12432811-12433419 28 6.2
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393... 28 6.2
06_03_1514 + 30696632-30696724,30696857-30697009,30697226-306973... 28 6.2
06_01_1032 + 8055678-8055782,8055875-8055936,8057302-8057507,805... 28 6.2
05_01_0556 - 4876849-4877328 28 6.2
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 8.2
>01_06_1820 +
40120861-40120863,40122484-40122612,40122710-40122895,
40123679-40123867,40124229-40124563,40124977-40125400
Length = 421
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Frame = +2
Query: 524 HYVLFRLRADXRGCSTSASPGSTSWTSKYRTTF-RALWRYMYHMYQLD 664
H ++ R R S P T W F RA WR +HM Q D
Sbjct: 280 HRRFYKTRGGGRCDDNSTGPPCTGWVEMMVPVFSRAAWRCAWHMIQND 327
>06_03_1516 +
30712208-30712780,30712984-30713139,30713819-30713985,
30714108-30714357,30714400-30715182,30715437-30715753,
30715775-30716036
Length = 835
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Frame = -1
Query: 409 FEYRFSIRDATSLSCTNKVVSP--WHGLHDVPFDFLVLKYRQPIVDQYGRVCRFEVGAEI 236
F RF D TS SC N + W D P DF V +G+V + ++ +
Sbjct: 478 FMLRFVPHDLTS-SCRNSPFTSEGWIMFLDFPLDFKTPAIIDKAVSLFGKVIKVQLDDNV 536
Query: 235 WGRLL 221
GRL+
Sbjct: 537 RGRLM 541
>04_01_0614 + 8049199-8049579
Length = 126
Score = 29.1 bits (62), Expect = 3.5
Identities = 22/82 (26%), Positives = 27/82 (32%)
Frame = -2
Query: 588 LPGDADVLQPRXSARSRNST*CRPLGTWSPCVLEVHRCVRDELVTPLISVHLCEPAPASV 409
LP D V P S N+T P V+ +RD + A AS
Sbjct: 20 LPSDTPVYGPSPSPSPSNATLSGPTAPLESTVISTSS-LRDRESRDKNNAAATATAAAST 78
Query: 408 LNTGSRLETRPPCPARIRLCPP 343
S + CPA CPP
Sbjct: 79 TRLASARQRTAHCPAAAACCPP 100
>09_04_0597 -
18859601-18859818,18860914-18861083,18861250-18861303,
18862759-18863284,18864465-18864663,18866787-18866852,
18866999-18867300,18867394-18867634,18867716-18867973,
18868076-18868207
Length = 721
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 471 RDELVTPLISVHLCEPAPASVLNTGSRLETRPP-CPARIRLC 349
R + TP+ + HL P + + SR E RPP P R C
Sbjct: 354 RIDETTPVCATHLSRLGPVNYIFARSRRELRPPFAPLLYRCC 395
>09_03_0110 + 12432562-12432801,12432811-12433419
Length = 282
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/36 (44%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Frame = -2
Query: 123 RLPSIVDAFIIS--SIS-GTSPLAVPFSAISSDIVI 25
R+PS+ ++++ IS G +PLA+P SA SS +VI
Sbjct: 124 RIPSVPTFYVVALTGISVGGAPLAIPPSAFSSGMVI 159
>07_01_0532 -
3935661-3935720,3936314-3936412,3937804-3937908,
3939474-3939666,3940434-3940513,3940607-3940904,
3941139-3941431
Length = 375
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = -2
Query: 522 RPLGTWSP-CVLEVHRCVRDELVTPLISVHLCEPAPASVLNTGSRLETRPPCPARIRLCP 346
+P+G WSP C+LE C+ + +TP SV L ++ +T + + T P R+
Sbjct: 129 QPIGHWSPNCLLE-ESCILE--MTP--SVSLAGETASTSSSTTTLVNTSQASPKVFRIPH 183
Query: 345 PGTDFMMCR 319
PG + R
Sbjct: 184 PGGSSSLIR 192
>06_03_1514 +
30696632-30696724,30696857-30697009,30697226-30697309,
30697451-30697569,30697769-30697870,30699071-30699190,
30699285-30699350,30699563-30699629,30699720-30699773,
30700379-30700534,30701130-30701228
Length = 370
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 524 HYVLFRLRADXRGCSTSASPGSTSWTSKYRTTF-RALWRYMYHMYQLD 664
H ++ RA S P T W F RA WR ++H+ Q D
Sbjct: 223 HRRIYDNRASMNCSDGSKGPPCTGWVEGMAPVFSRAAWRCVWHLIQND 270
>06_01_1032 +
8055678-8055782,8055875-8055936,8057302-8057507,
8057595-8058314,8058404-8058603,8058988-8059172,
8059287-8059354,8059432-8060246,8060502-8060599,
8060702-8060887,8061358-8061538,8061651-8061812,
8061894-8061937,8062059-8062115,8062409-8062505,
8062614-8062786,8062868-8063081,8063270-8063395,
8064072-8064188,8064459-8064566,8064729-8064898,
8065049-8065127,8065211-8065285,8065845-8065942,
8066030-8066137,8066238-8066295,8066527-8066631,
8067461-8069516,8069804-8070697,8070896-8071852,
8072022-8072075,8072157-8072222,8072294-8073472,
8073868-8075598,8075764-8075829,8076763-8077788,
8077893-8078041
Length = 4264
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +2
Query: 278 IDNGLAILENEKIERHIMKSVPGGHNLIRAGQGGRVSNREPVFKTEAGA 424
I N L + I + KS+ GG NL+ A G + + PV K G+
Sbjct: 304 ISNFAEGLASGNIPAELQKSILGGANLLNASFGWNQNAQGPVMKNTQGS 352
>05_01_0556 - 4876849-4877328
Length = 159
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = +2
Query: 272 ILIDNGLAILENEKIERHIMKSVPGGHNLIRAGQGGRVSNREPVFKTEAGAGSQR 436
IL+ + + ++EN+++E GGH G GGR PV K A QR
Sbjct: 3 ILLRSTVTVVENQEVEA--TGDDGGGHGPDGDGHGGRHDPGNPVSKQAAEHSGQR 55
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 2 LLNSSVS*ITMSDEIAENGTANGDVPEIELIIKASTID 115
+ N V + ++DEI N +VP+ L+ AST+D
Sbjct: 525 IYNEQVRDLLVNDEIRNNSQNGLNVPDASLVCVASTMD 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,227,345
Number of Sequences: 37544
Number of extensions: 445165
Number of successful extensions: 1383
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1347
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1383
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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