Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2107
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein. 69 4e-12
AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical... 69 4e-12
AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical... 36 0.021
AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical... 36 0.021
Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical pr... 28 5.6
AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical... 28 5.6
Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical pr... 27 9.8
>AY308063-1|AAQ75554.1| 290|Caenorhabditis elegans EXC-4 protein.
Length = 290
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +2
Query: 41 EIAENGTANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDM 220
+I NG P +EL +KAS ID RR GA LFCQE++M+LY L E+ ++V TV++
Sbjct: 6 QIQSNGDPQSK-PLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNV 64
Query: 221 QKPPPDFRTNFEATHPPILI--DNGLAILENEKIERHI 328
F+ NF PPI+I + L +N +IE I
Sbjct: 65 NSEA--FKKNFLGAQPPIMIEEEKELTYTDNREIEGRI 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Frame = +3
Query: 357 LFVQDKEVASLIENLYSKLKLVLVRK---DEQKS---------AALRAHLGR-------I 479
LF +D IENLY KL L K D+ K A ++ H R I
Sbjct: 111 LFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNI 170
Query: 480 DGLLERRETRFLTGDTMCCFDCELMXEVAAHPRRREV-LRGLRNTGRRSVLCGVTCITCI 656
D LL R++R+L G++M +DCELM PR + + GL G + T +
Sbjct: 171 DQLLSERKSRYLLGNSMTEYDCELM------PRLHHIRIIGLSLLG-FDIPHNFTHLWAY 223
Query: 657 SLTRSR-----KNCPADQD 698
LT R ++CPADQD
Sbjct: 224 ILTAYRTAAFIESCPADQD 242
>AL132876-18|CAD21669.2| 290|Caenorhabditis elegans Hypothetical
protein Y105E8A.22 protein.
Length = 290
Score = 68.5 bits (160), Expect = 4e-12
Identities = 40/98 (40%), Positives = 56/98 (57%), Gaps = 2/98 (2%)
Frame = +2
Query: 41 EIAENGTANGDVPEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAELKTISLKVTTVDM 220
+I NG P +EL +KAS ID RR GA LFCQE++M+LY L E+ ++V TV++
Sbjct: 6 QIQSNGDPQSK-PLLELYVKASGIDARRIGADLFCQEFWMELYALYEIGVARVEVKTVNV 64
Query: 221 QKPPPDFRTNFEATHPPILI--DNGLAILENEKIERHI 328
F+ NF PPI+I + L +N +IE I
Sbjct: 65 NSEA--FKKNFLGAQPPIMIEEEKELTYTDNREIEGRI 100
Score = 40.3 bits (90), Expect = 0.001
Identities = 46/139 (33%), Positives = 62/139 (44%), Gaps = 25/139 (17%)
Frame = +3
Query: 357 LFVQDKEVASLIENLYSKLKLVLVRK---DEQKS---------AALRAHLGR-------I 479
LF +D IENLY KL L K D+ K A ++ H R I
Sbjct: 111 LFEKDPSAEKRIENLYRNFKLFLRAKVEFDKGKKEPSRVEDLPAQIKVHYNRVCEQLSNI 170
Query: 480 DGLLERRETRFLTGDTMCCFDCELMXEVAAHPRRREV-LRGLRNTGRRSVLCGVTCITCI 656
D LL R++R+L G++M +DCELM PR + + GL G + T +
Sbjct: 171 DQLLSERKSRYLLGNSMTEYDCELM------PRLHHIRIIGLSLLG-FDIPHNFTHLWAY 223
Query: 657 SLTRSR-----KNCPADQD 698
LT R ++CPADQD
Sbjct: 224 ILTAYRTAAFIESCPADQD 242
>AL132948-33|CAD57708.2| 734|Caenorhabditis elegans Hypothetical
protein Y39B6A.43b protein.
Length = 734
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 366 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 512
Q ++ ENL+ +LKL L+R++ Q A L R DGLL R E RF
Sbjct: 650 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 697
>AL132948-32|CAD31833.3| 731|Caenorhabditis elegans Hypothetical
protein Y39B6A.43a protein.
Length = 731
Score = 36.3 bits (80), Expect = 0.021
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = +3
Query: 366 QDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 512
Q ++ ENL+ +LKL L+R++ Q A L R DGLL R E RF
Sbjct: 647 QQSTSSTSAENLH-ELKLQLIRREMQNQDRFSAVLDRADGLLARMEQRF 694
>Z81515-5|CAB04193.2| 238|Caenorhabditis elegans Hypothetical
protein F26H11.5 protein.
Length = 238
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 426 VRKDEQKSAALRAHLGRIDGLLERRETRFLTGDTMCCFDC 545
V+ E + A L R+D L +ET+FL D + DC
Sbjct: 116 VKDVEHRDTAFNTELLRLDKYLSEQETKFLISDDVTHIDC 155
>Z66520-6|CAA91385.1| 226|Caenorhabditis elegans Hypothetical
protein F49E12.8 protein.
Length = 226
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +3
Query: 369 DKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRF 512
D E ++I+ L S+ KL +VR++EQ+ + + RRE+ F
Sbjct: 170 DDEDLTVIQQLKSRRKLSMVRQEEQEELTASMDRMNVGSVHSRRESGF 217
>Z81561-1|CAB04552.2| 550|Caenorhabditis elegans Hypothetical
protein K03D10.3 protein.
Length = 550
Score = 28.7 bits (61), Expect = 4.2
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 146 QEYFMDLYLLAELKTISLKVTTVDMQKPPPDFRTN 250
+ Y ++ +++ +K + + +D +KPP + RTN
Sbjct: 38 KRYMVEKFIINTVKKVVAVIIHIDFRKPPQEVRTN 72
>Z70783-7|CAA94858.1| 239|Caenorhabditis elegans Hypothetical
protein ZK856.10 protein.
Length = 239
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 77 PEIELIIKASTIDGRRKGACLFCQEYFMDLYLLAE 181
P ++ +I+A I R+G CL Q +F D+++ AE
Sbjct: 79 PFVDEVIEAKVIGSSRQGLCLTIQ-FFEDIFVPAE 112
>AF099925-13|AAC69503.2| 287|Caenorhabditis elegans Hypothetical
protein K01A2.1 protein.
Length = 287
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 230 PPDFRTNFEATHPPILIDNGLAILENEKIERHIMKS 337
P D RT F A HP + ID + L E+I + ++S
Sbjct: 147 PKDGRTLFSARHPTVTIDKRIKKLAAERIITNKIRS 182
>Z71258-5|CAA95784.2| 452|Caenorhabditis elegans Hypothetical
protein C01H6.6 protein.
Length = 452
Score = 27.5 bits (58), Expect = 9.8
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 342 QGDTTLFVQDKEVASLIENLYSKLKLVLVRKDEQKSAALRAHLGRIDGLLERRETRFLTG 521
QG + L V + E + I + + ++L+ DE + + LG + +LE+R
Sbjct: 328 QGHSRLPVYEGETRNKIRGVLNITDMMLLMDDEGRGSDTDLTLGTMLSVLEKRRKHCFVL 387
Query: 522 DTM 530
DTM
Sbjct: 388 DTM 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,527,510
Number of Sequences: 27780
Number of extensions: 353825
Number of successful extensions: 1098
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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