Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2106
(750 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0805 + 21400345-21400701,21400797-21400975,21401223-214012... 60 2e-09
02_04_0592 - 24171698-24172285 50 2e-06
07_01_1023 + 8840754-8842988,8843189-8843362 31 0.74
04_03_0673 - 18562497-18563010,18563080-18563471,18563553-185636... 31 0.74
08_02_1423 + 26975466-26975508,26976253-26976365,26976505-269765... 29 3.0
05_01_0463 - 3666626-3666933,3667060-3667258,3667388-3667629,366... 29 5.2
01_05_0274 - 20293963-20294065,20294501-20294560,20295006-202950... 29 5.2
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 28 6.9
>08_02_0805 +
21400345-21400701,21400797-21400975,21401223-21401271,
21401310-21401390,21401988-21402605
Length = 427
Score = 60.1 bits (139), Expect = 2e-09
Identities = 35/81 (43%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +2
Query: 59 LKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKLEGD-VVKVKNVHIIDGVKKY 232
+K V N +L Y G WYEI+ FP+ + ++G + A Y L GD VKV N DG + +
Sbjct: 1 MKVVRNLDLERYMGRWYEIACFPSRFQPRDGTNTRATYTLAGDGAVKVLNETWTDGRRGH 60
Query: 233 IEGTAKLTDDANKAAKLTVTF 295
IEGTA D + AKL V F
Sbjct: 61 IEGTAYRADPVSDEAKLKVKF 81
>02_04_0592 - 24171698-24172285
Length = 195
Score = 50.0 bits (114), Expect = 2e-06
Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 4/94 (4%)
Frame = +2
Query: 26 AEVIHEGTCPELKPVNNFNLTAYQGIWYEISKFPNESE-KNGKCSSAEYKL--EGDVVKV 196
A + + + E+ V ++ Y G WYEI+ PN + ++G+ + A Y L +G V V
Sbjct: 3 AAAVEKKSGSEMTVVRGLDVARYMGRWYEIASLPNFFQPRDGRDTRATYALRPDGATVDV 62
Query: 197 KN-VHIIDGVKKYIEGTAKLTDDANKAAKLTVTF 295
N G + YI+GTA D A+ AKL V F
Sbjct: 63 LNETWTSSGKRDYIKGTAYKADPASDEAKLKVKF 96
>07_01_1023 + 8840754-8842988,8843189-8843362
Length = 802
Score = 31.5 bits (68), Expect = 0.74
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = +2
Query: 41 EGTCPELKP-VNNFNLTAYQGIW-YEISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHII 214
EG C + + + NL G+W +++S N S K G C A D++ KN+ I+
Sbjct: 288 EGLCEDANDTIPSTNLMITAGVWGHDVS---NYSAKEGLCEEAN-----DIIPRKNLTIV 339
Query: 215 DGV 223
DGV
Sbjct: 340 DGV 342
>04_03_0673 -
18562497-18563010,18563080-18563471,18563553-18563649,
18563977-18564149,18564349-18564485,18564806-18564872
Length = 459
Score = 31.5 bits (68), Expect = 0.74
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 68 VNNFNLTAYQGIWYEISKFPNESEKNGKCSSAEYKLEGD 184
V NFN+ + G WY IS N + C E+++EGD
Sbjct: 202 VKNFNMADFNGKWY-ISSGLNPTFDTFDCQLHEFRVEGD 239
>08_02_1423 +
26975466-26975508,26976253-26976365,26976505-26976561,
26976607-26976801,26976912-26977060,26977145-26977307,
26977865-26977957,26978075-26978158,26978865-26979004,
26979093-26979192
Length = 378
Score = 29.5 bits (63), Expect = 3.0
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Frame = +2
Query: 122 FPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTA-KLTDDANKAAKLTVTFK 298
F S G EY+ E V +V +G+KK ++G A K +D+ L
Sbjct: 209 FAEPSGTEGTEEEGEYEDESIVHHTASVGDDEGLKKALDGGADKDEEDSEGRRALHFACG 268
Query: 299 FGEISRDGSVQI 334
+GE+S D ++ +
Sbjct: 269 YGEVSNDKNISL 280
>05_01_0463 -
3666626-3666933,3667060-3667258,3667388-3667629,
3667823-3669035
Length = 653
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 371 NCKYDDKKKSHQVFVWILSRNKKLEGDAKTAVDN 472
+CK D H + + N+ LEGD ++ +DN
Sbjct: 556 SCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDN 589
>01_05_0274 -
20293963-20294065,20294501-20294560,20295006-20295052,
20296065-20296155,20296276-20296427,20296891-20297049,
20297132-20297381,20298255-20298317,20298394-20298566
Length = 365
Score = 28.7 bits (61), Expect = 5.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = -2
Query: 719 ISVIGW-LWSLQSGSTNKTKPYANLNTVVTIQFDSPQCFKYLFSLNVFRVRLSRW 558
+S W LW++ G + P LNT + I F + QCF +L + R SRW
Sbjct: 150 LSTTCWALWTVLQGPMLEVYPSKLLNTTIQIVFATIQCF--FIALAIER-DFSRW 201
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 28.3 bits (60), Expect = 6.9
Identities = 30/112 (26%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Frame = +2
Query: 173 LEGDVVKVKNVHII-DGVKKYIEG-TAKLTDDANKAAKLTVTF-KFGEISRDGSVQILAT 343
++G + V + H+I DG + G A + AN AA++ + + G+ ++D + I
Sbjct: 67 IDGFIAVVAHTHVIHDGA---VTGKAADVLAAANTAAEVALRLVRPGKKNKDVTEAI--- 120
Query: 344 DYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKL--EGDAKTAVDNFIXEHSK 493
A AY+CK + SHQ+ +++ NK + +A T VD+ E ++
Sbjct: 121 --QKVAAAYDCKIVEGVLSHQLKQFVIDGNKVVLSVSNADTKVDDAEFEENE 170
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,612,376
Number of Sequences: 37544
Number of extensions: 323998
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -