Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2106
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical pr...    34   0.094
AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated...    34   0.094
AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type chlo...    34   0.094
Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical pr...    32   0.50 
Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical ...    29   3.5  
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for...    29   3.5  
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for...    29   3.5  
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei...    29   3.5  
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei...    29   3.5  
U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical pr...    28   6.2  

>Z75955-1|CAB00111.2|  796|Caenorhabditis elegans Hypothetical
           protein R07B7.1 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 278 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 436
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF328908-1|AAK01123.1|  796|Caenorhabditis elegans voltage-gated
           chloride channelCLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 278 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 436
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>AF319616-1|AAG49526.1|  796|Caenorhabditis elegans CLC-type
           chloride channel CLH-6 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.094
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
 Frame = +2

Query: 278 KLTVTFKFGEISRDGSVQILATDYN--NYAIAYNCKYDD--KKKSHQVFVWILSRNK 436
           +L  + +  ++ R  S + L+  Y   NY I+ N  Y D  KK SHQ+ +W +SRN+
Sbjct: 46  ELLFSRQLDDVGRTDSHEALSARYESLNYEISENRLYRDAEKKPSHQLTLWRISRNR 102


>Z68270-5|CAA92570.1|  174|Caenorhabditis elegans Hypothetical
           protein ZC410.5a protein.
          Length = 174

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
 Frame = +2

Query: 95  QGIWYEISKFPNESEKNGK--CSSAEYKLEGDVVKVKNVHIIDGVKKYIEGTAKLTDDAN 268
           QG+  ++  F +   +N K   S+ + +LE +V +VK+  ++ G+K+ ++G   L +DA 
Sbjct: 36  QGVTSDVGNFFSNQFQNAKDLFSNDQNELEKNVQRVKD--LLTGLKEKVKGLEPLANDAQ 93

Query: 269 KAAKLTVTFKFGEIS 313
           K     V     E+S
Sbjct: 94  KETLKKVDGFLAEVS 108


>Z81519-2|CAB04217.1|  468|Caenorhabditis elegans Hypothetical
           protein F29C12.5 protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +2

Query: 113 ISKFPNESEKNGKCSSAEYKLEGDVVKVKNVHIIDG-VKKYIEGTAKL-TDDANKAAKLT 286
           +S  P +S KN   S+ E+     VVK +N HI+   +  + E   KL   D  +A K  
Sbjct: 129 MSGLPKKSPKNFDESNKEFSDGIVVVKHQNFHILKKFLAFHCEYLEKLFFGDFKEAGKAE 188

Query: 287 VTFKFGEISRDGSVQILATDYNNYAI 364
           VT K   IS      +LA  Y +YAI
Sbjct: 189 VTLK--AISSTDFHYLLAVLYEDYAI 212


>AL117195-3|CAB55009.1|  629|Caenorhabditis elegans Hypothetical
           protein Y57A10A.4 protein.
          Length = 629

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 27/90 (30%), Positives = 39/90 (43%)
 Frame = +2

Query: 287 VTFKFGEISRDGSVQILATDYNNYAIAYNCKYDDKKKSHQVFVWILSRNKKLEGDAKTAV 466
           V  +F E   DG      + Y +YA  +N    +  K  +    I  R + + G A    
Sbjct: 31  VLTEFSESENDG-----LSHYAHYAKFHNYLVPNMAKLAEYS--IEERVRVIFGFAAVVS 83

Query: 467 DNFIXEHSKEIDSSKLVHTDFSEEACKFTS 556
           D+F+    K+I    LVH D  +  CKFTS
Sbjct: 84  DDFL----KQIQREGLVHLDKKKRICKFTS 109


>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
            protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
            protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
            805, isoform b protein.
          Length = 4450

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
            805, isoform a protein.
          Length = 4280

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 44   GTCPELKPVNNFNLTAYQGIWYEIS-KFPNESEKNGKCSSAEYKLE 178
            G    L P  N NL +   +   +S + PN++  + KCS+  YKLE
Sbjct: 2421 GCAAPLSPPTNLNLASPSNVQVRVSWQAPNQN--SWKCSAIRYKLE 2464


>U42848-7|AAA83612.2|  567|Caenorhabditis elegans Hypothetical
           protein C31H1.8 protein.
          Length = 567

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 389 KKKSHQVFVWILSRNKKLEGDAKTAVDNFIXEHSK 493
           K  S  V+  + SRN+KLE   + A+D+F+   SK
Sbjct: 240 KMHSDYVYAIVHSRNEKLERRLRGAIDSFMEIESK 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,134,019
Number of Sequences: 27780
Number of extensions: 286509
Number of successful extensions: 848
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)