Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2103
         (730 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp. P...    35   1.8  
UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonucleas...    34   4.1  
UniRef50_Q4MZC1 Cluster: Putative uncharacterized protein; n=2; ...    33   7.2  
UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus 1...    33   9.5  
UniRef50_A0C0M1 Cluster: Chromosome undetermined scaffold_14, wh...    33   9.5  

>UniRef50_A6FH79 Cluster: Na+/H+ antiporter; n=1; Moritella sp.
           PE36|Rep: Na+/H+ antiporter - Moritella sp. PE36
          Length = 403

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 395 MTLLIICSSLLGVRILRSIISLNSFLILGWLFWLAV 288
           ++L   C S+L +    +I++L  +LI+GWL W+AV
Sbjct: 184 LSLACACISILWLLHRNNIMTLTPYLIIGWLLWVAV 219


>UniRef50_Q2JMF8 Cluster: Single-stranded-DNA-specific exonuclease
           RecJ; n=2; Synechococcus|Rep:
           Single-stranded-DNA-specific exonuclease RecJ -
           Synechococcus sp. (strain JA-2-3B'a(2-13))
           (Cyanobacteria bacteriumYellowstone B-Prime)
          Length = 758

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 23/69 (33%), Positives = 33/69 (47%)
 Frame = +1

Query: 25  CAYSFVLSVKRFQAVEVRVEDQVRELATSLNQPQHLLVILSRQRISRHYPDGRKNQLQIL 204
           C  +  L+++R  A  V  + Q R LA  +     LLV   R  ++    D    QLQ+L
Sbjct: 432 CLAAVQLALQRELAARVSPDQQARALAVEIILDWELLVSQDRDGVAEL--DEVYRQLQLL 489

Query: 205 KAFLRGNPN 231
           + F  GNPN
Sbjct: 490 QPFGHGNPN 498


>UniRef50_Q4MZC1 Cluster: Putative uncharacterized protein; n=2;
            Theileria|Rep: Putative uncharacterized protein -
            Theileria parva
          Length = 1156

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 18/53 (33%), Positives = 31/53 (58%)
 Frame = -2

Query: 549  LNLISRYLVEDSFRLVVVDSYFLPVVSFHFLFAVSYQYQNYRKDRNWTMGTND 391
            L L+SR+ +  +FR ++  S+F   +  HF   +S  +   RK RN+T G++D
Sbjct: 976  LKLLSRFSLR-TFRFILFLSFFYLCMKRHFKLMLSDLFYLSRKVRNFTTGSSD 1027


>UniRef50_Q53D41 Cluster: JM29; n=3; Cercopithecine herpesvirus
           17|Rep: JM29 - Macaca fuscata rhadinovirus
          Length = 536

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 93  KRTSYKPQPAPTSFSYPQSAAHKPSLSGW-QEKPATNT 203
           K T  +PQP P  FS+PQ+ A  P L+   Q  P T+T
Sbjct: 400 KDTDQRPQPPPVQFSWPQTYASAPYLAYQPQWYPGTDT 437


>UniRef50_A0C0M1 Cluster: Chromosome undetermined scaffold_14, whole
           genome shotgun sequence; n=4; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_14,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 578

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
 Frame = -2

Query: 579 IVXDDKVLR-----DLNLISRYLVEDSFRLVVVDSYFLPVVSFHFLFAVSYQYQNYRKD 418
           IV  DKV+R      + +++ +L E     + +    L  VSF  + A+ Y++Q +RK+
Sbjct: 488 IVAQDKVIRTTKHFSVEVVTTFLFEQQINFIYLILIILGFVSFFSVSAICYKFQQFRKE 546


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,223,236
Number of Sequences: 1657284
Number of extensions: 11360940
Number of successful extensions: 29326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 28364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29294
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)