Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2103
(730 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0651 + 20287661-20287701,20288034-20288124,20288737-202888... 30 2.2
04_03_0904 + 20717005-20718087 29 2.9
06_01_0159 + 1193479-1194435,1194509-1194652,1194735-1194821,119... 29 3.8
01_01_0090 + 706340-707296,707370-707513,707596-707682,707771-70... 29 3.8
01_01_0089 - 699533-699643,699738-700046,700134-700220,700298-70... 29 3.8
09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429 28 6.6
05_06_0230 + 26585439-26586608 28 6.6
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559 28 6.6
11_03_0068 + 9564354-9565180,9566658-9568704 28 8.7
11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614 28 8.7
08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-90... 28 8.7
04_04_1421 - 33449539-33449994 28 8.7
>07_03_0651 +
20287661-20287701,20288034-20288124,20288737-20288831,
20289433-20289523,20290066-20290250,20290590-20290647,
20290812-20290852,20290935-20291009,20292298-20292354,
20292480-20292546,20292754-20292900,20292986-20293210,
20293332-20293493,20293570-20293647,20293735-20293812
Length = 496
Score = 29.9 bits (64), Expect = 2.2
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 666 HIXRNCSQHYMXVEVXVDGSIGFRY*YIGIVXDDKVL----RDLNLISRYLVEDSFRLVV 499
H R Q Y+ V+ ++ + Y+ IV + V ++L L+ Y E + +
Sbjct: 370 HHDRLAGQSYIVKHGDVNANVTIEH-YLQIVKTELVTLRSSKELKLVEEY--EYTAHSSL 426
Query: 498 VDSYFLPVVSFHF 460
V S+++PVV FHF
Sbjct: 427 VHSFYVPVVKFHF 439
>04_03_0904 + 20717005-20718087
Length = 360
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 102 SYKPQPAPTSFSYPQSAAHKPSLSGWQEKP 191
+YKPQP PT P KP+ S + KP
Sbjct: 301 TYKPQPKPTPTPTPYKPQPKPTPSPYTPKP 330
>06_01_0159 +
1193479-1194435,1194509-1194652,1194735-1194821,
1194910-1195244,1195600-1195840,1195921-1195995,
1196072-1196157,1196591-1196663,1196805-1197535,
1197613-1197784,1197862-1197948,1198255-1198344,
1198439-1198549
Length = 1062
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 298 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 390
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>01_01_0090 +
706340-707296,707370-707513,707596-707682,707771-708105,
708462-708702,708783-708857,708932-709017,709451-709523,
709637-709961,710092-711750,711938-713322
Length = 1788
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 298 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 390
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>01_01_0089 -
699533-699643,699738-700046,700134-700220,700298-700469,
700547-701373,701487-701559,701993-702078,702153-702227,
702308-702548,702905-703239,703328-703414,703497-703640,
703714-704670
Length = 1167
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 298 QNNHPSIKKLFKEIMLLSIRTPNKLEQIISR 390
+ NH SI +++++IM + P+K+E ++ R
Sbjct: 478 KQNHSSIVEMYEKIMKTQSQMPSKMESLVDR 508
>09_03_0010 - 11486996-11488073,11488704-11488838,11502017-11502429
Length = 541
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/27 (44%), Positives = 20/27 (74%)
Frame = +1
Query: 289 TASQNNHPSIKKLFKEIMLLSIRTPNK 369
TA +++ P IKK+FK+++L +T NK
Sbjct: 133 TARRDSAPDIKKVFKDMLLELDKTKNK 159
>05_06_0230 + 26585439-26586608
Length = 389
Score = 28.3 bits (60), Expect = 6.6
Identities = 18/58 (31%), Positives = 25/58 (43%)
Frame = +1
Query: 541 QVQVPEYLIIXDNPNILITETNTTIHXDLHRHIVLGTISXDMEIIIQDTRHKCLDTLE 714
Q Q +L++ NP L+ N T D+ VLG + D +I I C T E
Sbjct: 78 QGQAQRHLLLRHNPFRLLVLPNVTHFPDMVYPPVLGVVKRDHQISIVAATLSCKPTEE 135
>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
Length = 789
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 111 PQPAPTSFSYPQSAAHKPSL 170
P PAP S + PQ+A H+P L
Sbjct: 11 PPPAPESPTAPQTAVHRPDL 30
>11_03_0068 + 9564354-9565180,9566658-9568704
Length = 957
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 277 DCQGTASQNNHPSIKKLFKEIML 345
DCQ S + P I+K+FK I++
Sbjct: 224 DCQAFVSVSQKPDIRKIFKNILI 246
>11_03_0061 - 9409470-9409488,9409788-9410265,9410311-9410614
Length = 266
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 277 DCQGTASQNNHPSIKKLFKEIML 345
DCQ S + P I+K+FK I++
Sbjct: 209 DCQAFVSVSQKPDIRKIFKNILI 231
>08_01_0114 - 900530-901191,901269-901338,901536-901640,901721-901831,
901912-902016,902245-902391,903273-903354,903445-903786,
903873-904177,904259-904435,904799-904852,905171-905254,
905855-905968,906048-906321,907552-907926,908003-908267,
908352-908538,908615-909052,909895-909966,910037-910630,
911471-911623,911700-911828,912326-912657,912705-912840,
913046-913491,913580-915087,915169-915431,915622-915738,
915844-916014,916743-916845,916930-916988,918360-918461,
918560-918649,918727-918877,919745-919830,919926-920102,
920915-920978,921859-922008,923132-923211,923311-923376,
924540-924747,925502-925575,925761-925848,926140-926312,
926541-926609,926698-926741,927074-927167,927290-927366,
927475-927552,927992-928085
Length = 3314
Score = 27.9 bits (59), Expect = 8.7
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = -2
Query: 726 YSQGFQSIQAFVTRILDYNFHIXRNCSQHYMXVEVXVDGSIGFRY*YIGIVXDDKVLRDL 547
Y Q +SI+ V + C H + VEV + S+G Y + +D + L
Sbjct: 2534 YQQKCESIETIVYPYTSCQYAWDEPCYPHRLTVEVPGERSLGT---YNLDILNDDIHVSL 2590
Query: 546 NLISRYLVEDSFRLVVVDSYFLPVVS 469
L S + VE F L+ L V+S
Sbjct: 2591 PLTSEFCVEKDFILLGPSQKRLKVLS 2616
>04_04_1421 - 33449539-33449994
Length = 151
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 105 YKPQPAPTSFSYPQSAAHKPSLSGW 179
Y QP P ++YP + A +P SG+
Sbjct: 80 YPAQPPPAGYAYPAANAGRPGRSGF 104
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,911
Number of Sequences: 37544
Number of extensions: 306157
Number of successful extensions: 673
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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