Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2103
         (730 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein ...    27   0.79 
AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long fo...    25   1.8  
AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    23   7.3  

>AY263175-1|AAP78790.1|  814|Anopheles gambiae TmcA-like protein
           protein.
          Length = 814

 Score = 26.6 bits (56), Expect = 0.79
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = -2

Query: 564 KVLRDLNLISRYLVEDSFRLVVVDSYFLPVVSFHFLF 454
           ++LR+L  ++ YL+    R+  ++S+F  VV+ +F F
Sbjct: 119 QLLRELANLATYLIPWESRIKEIESHFGSVVASYFTF 155


>AF457552-1|AAL68782.1|  311|Anopheles gambiae D7 protein long form
           protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 603 GFRY*YIGIVXDDKVLRDLNLISRYLVEDSFRLVV 499
           GFRY     +  D+V+RD NLI++  +E   R V+
Sbjct: 215 GFRYMDDSGLKVDEVVRDFNLINKSDLEPEVRSVL 249


>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 392 SFVPIVQFRSFR*FWY 439
           SF+P + F +FR  WY
Sbjct: 76  SFIPSIAFPTFRSSWY 91


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,622
Number of Sequences: 2352
Number of extensions: 11968
Number of successful extensions: 74
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74428737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)