Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2100
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    89   6e-19
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.6  
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo...    27   3.4  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    26   6.0  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    26   6.0  
SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po...    25   7.9  

>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 89.0 bits (211), Expect = 6e-19
 Identities = 47/117 (40%), Positives = 72/117 (61%)
 Frame = +3

Query: 6    FVVSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYDLRV 185
            F V+L    + E   E +   FKL  T + + M AFD +  +KKYD VE+IL EFY++R+
Sbjct: 997  FNVTLTEAGMKEALNESLEVKFKLSRTQATSNMIAFDASGRIKKYDSVEDILTEFYEVRL 1056

Query: 186  KYYVRRKDYLEGQLQAEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAP 356
            + Y RRK+++  +L+   D+ SNQARFI    +  LVV  KK+K ++ EL ++ + P
Sbjct: 1057 RTYQRRKEHMVNELEKRFDRFSNQARFIHMIIEGELVVSKKKKKDLIVELKEKKFQP 1113



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 532  LLGMSMWMLTKXKKDELLKQRDQ 600
            LL M +W LT  +  ELLK++D+
Sbjct: 1152 LLSMPLWSLTYERYVELLKKKDE 1174


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/114 (20%), Positives = 53/114 (46%)
 Frame = +3

Query: 51   EGIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYDLRVKYYVRRKDYLEGQLQ 230
            E I  + KL+T +     N   Y C   +YD ++++   F+     +Y   + Y   + +
Sbjct: 1184 ERIRNIKKLKTDMLTKLENTVKYLC---EYDSIDKVRNSFFKNLNSFY---EMYSIAKAE 1237

Query: 231  AEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAPDPIADWKKRASK 392
             E ++   + R I+ + D+  ++  +++ ++V +   +   P+   D +  ASK
Sbjct: 1238 NE-ERFEKEKRRIMSE-DRDKLIRGRQKTSIVAKYRNKRELPEDSDDKQDTASK 1289


>SPAC20G8.10c ||SPAC3A12.01c|beclin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +3

Query: 141 DKVEEILREFYDLRVKYYVRRKDYLEGQLQAEADKLSNQARF 266
           DK++++LRE  + + K Y   +++     Q +  KLS + ++
Sbjct: 214 DKLQKLLRELDEEKEKVYAEEQEFYNNLNQFQIKKLSLERQY 255


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 23/79 (29%), Positives = 36/79 (45%)
 Frame = +3

Query: 69   FKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYDLRVKYYVRRKDYLEGQLQAEADKL 248
            +K Q+  S+        N  LK  +  +++LREFYD R+       D+L  Q +    K 
Sbjct: 896  YKYQSLRSIDKAQELLSNLGLKLKEPTDDVLREFYD-RLSTKFLECDFLVKQSEPLDRKR 954

Query: 249  SNQARFIL*KCDKGLVVEN 305
             +    IL +C  G V+ N
Sbjct: 955  IDAISVILSEC--GFVLFN 971


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 120 NCCLKKYDKVEEILREFYDLRVKYYVRRKDYLEGQLQA 233
           N  L  +D+V ++L  FYD+ V+  VR   Y+   L+A
Sbjct: 780 NRILTGFDRVLQLLPSFYDIPVR--VRNVQYVSPALKA 815


>SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 639

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +3

Query: 282 DKGLVVENKKRKAMVEELIKRGYAPD 359
           D GLVVENKK        ++R + P+
Sbjct: 457 DFGLVVENKKNTETALSFLERNHLPN 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,859
Number of Sequences: 5004
Number of extensions: 35592
Number of successful extensions: 90
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)