Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2100
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0417 - 28796121-28796743,28796829-28796925,28797010-287970...    96   2e-20
02_03_0218 + 16526082-16526375,16526606-16526725,16528078-165282...    29   3.5  
03_06_0701 - 35620559-35620777,35620872-35620949,35621038-356211...    29   4.7  
06_01_0072 + 596333-597442                                             28   8.2  

>02_05_0417 - 28796121-28796743,28796829-28796925,28797010-28797093,
            28797173-28797234,28797316-28797460,28797542-28797961,
            28798041-28798090,28798163-28798349,28798426-28798680,
            28798785-28798953,28799044-28799177,28799291-28799446,
            28799534-28799719,28799798-28799962,28800074-28800190,
            28800553-28800762,28800850-28801049,28801135-28801405,
            28801481-28801547,28801644-28801942,28802425-28802991
          Length = 1487

 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 48/119 (40%), Positives = 75/119 (63%)
 Frame = +3

Query: 6    FVVSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYDLRV 185
            F+++L    ++    EG+ K FKL TTI  T M+ FD N  ++KYD  E+IL+EF+ LR+
Sbjct: 945  FLITLSKENMAIALQEGLEKKFKLTTTIGTTNMHLFDSNGKIRKYDTPEDILKEFFGLRL 1004

Query: 186  KYYVRRKDYLEGQLQAEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAPDP 362
            ++Y +RK  L   ++ E  KLSN+ RFIL   +  ++V N+KR  +  EL ++G+ P P
Sbjct: 1005 EFYEKRKRVLLENIELELKKLSNKVRFILAVVEGDIIVNNRKRAELFVELKQKGFDPFP 1063


>02_03_0218 +
           16526082-16526375,16526606-16526725,16528078-16528238,
           16528601-16528634,16529296-16529398,16529784-16529963,
           16530726-16530742
          Length = 302

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/55 (30%), Positives = 29/55 (52%)
 Frame = +3

Query: 12  VSLLPGKLSEIEAEGIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYD 176
           ++LL  KL+EI   GI K+ K    + M      ++    KKY ++ + LRE ++
Sbjct: 105 INLLANKLAEIWNHGIGKIEKHGMKLKMLLYLNAEHEAWCKKYMELYQELRENWE 159


>03_06_0701 -
           35620559-35620777,35620872-35620949,35621038-35621191,
           35621279-35621391,35621487-35621586,35622193-35622389,
           35622470-35622526,35622630-35622734,35622824-35622931,
           35623651-35623848,35624022-35624024
          Length = 443

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 153 EILREFYDLRVKYYVRRKDYLE 218
           E+ R +Y+L ++YY    DYLE
Sbjct: 212 ELKRIYYELMIRYYSHNNDYLE 233


>06_01_0072 + 596333-597442
          Length = 369

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
 Frame = +3

Query: 102 MNAFDYNCCLKKYDKVEEILREFYDLRVKYYVRR--KDYLEGQ--LQAE-ADKLSN 254
           +  FD+ CC  K  +V+ + R   D+ ++ +  R  + Y E +  LQ E  DKL N
Sbjct: 292 LRVFDWRCCYAKEVRVDAVGRHLSDVVIELFAGRLPRCYNEAKRFLQMEDCDKLMN 347


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,315,565
Number of Sequences: 37544
Number of extensions: 230910
Number of successful extensions: 555
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)