Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2100
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X61209-1|CAA43523.1| 1447|Drosophila melanogaster DNA topoisomer...   163   2e-40
BT010240-1|AAQ23558.1| 1157|Drosophila melanogaster RE49802p pro...   163   2e-40
AE014134-3099|AAF53802.2| 1447|Drosophila melanogaster CG10223-P...   163   2e-40

>X61209-1|CAA43523.1| 1447|Drosophila melanogaster DNA topoisomerase
            type II protein.
          Length = 1447

 Score =  163 bits (396), Expect = 2e-40
 Identities = 84/182 (46%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
 Frame = +3

Query: 3    RFVVSLLPGKLSEIEAE--GIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYD 176
            RFV+S  PG+   I AE  G ++VFKL TT+S   M+AFD N CL+++    +IL+E+Y 
Sbjct: 947  RFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYK 1006

Query: 177  LRVKYYVRRKDYLEGQLQAEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAP 356
            LR +YY RR+D+L GQL A+AD+LS+QARFIL KC+K LVVENK+RKAM +EL+KRGY P
Sbjct: 1007 LRREYYARRRDFLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRP 1066

Query: 357  DPIADWKKRASKIQGLTA-LXXXXXXXXXXXXXXXXXXXXXXXXXXAFQQLKEVKKFNYS 533
            DP+ +W++R        A                            AF++L +VKKF+Y 
Sbjct: 1067 DPVKEWQRRIKMEDAEQADEEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDVKKFDYL 1126

Query: 534  AG 539
             G
Sbjct: 1127 LG 1128



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%)
 Frame = +1

Query: 532  LLGMSMWMLTKXKKDELLKQRDQXXXXXXXXKNKTAPML 648
            LLGMSMWMLT+ KK+ELLKQRD         + KT  ML
Sbjct: 1126 LLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEML 1164


>BT010240-1|AAQ23558.1| 1157|Drosophila melanogaster RE49802p protein.
          Length = 1157

 Score =  163 bits (396), Expect = 2e-40
 Identities = 84/182 (46%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
 Frame = +3

Query: 3    RFVVSLLPGKLSEIEAE--GIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYD 176
            RFV+S  PG+   I AE  G ++VFKL TT+S   M+AFD N CL+++    +IL+E+Y 
Sbjct: 832  RFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYK 891

Query: 177  LRVKYYVRRKDYLEGQLQAEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAP 356
            LR +YY RR+D+L GQL A+AD+LS+QARFIL KC+K LVVENK+RKAM +EL+KRGY P
Sbjct: 892  LRREYYARRRDFLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRP 951

Query: 357  DPIADWKKRASKIQGLTA-LXXXXXXXXXXXXXXXXXXXXXXXXXXAFQQLKEVKKFNYS 533
            DP+ +W++R        A                            AF++L +VKKF+Y 
Sbjct: 952  DPVKEWQRRIKMEDAEQADEEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDVKKFDYL 1011

Query: 534  AG 539
             G
Sbjct: 1012 LG 1013



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%)
 Frame = +1

Query: 532  LLGMSMWMLTKXKKDELLKQRDQXXXXXXXXKNKTAPML 648
            LLGMSMWMLT+ KK+ELLKQRD         + KT  ML
Sbjct: 1011 LLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEML 1049


>AE014134-3099|AAF53802.2| 1447|Drosophila melanogaster CG10223-PA
            protein.
          Length = 1447

 Score =  163 bits (396), Expect = 2e-40
 Identities = 84/182 (46%), Positives = 114/182 (62%), Gaps = 3/182 (1%)
 Frame = +3

Query: 3    RFVVSLLPGKLSEIEAE--GIHKVFKLQTTISMTCMNAFDYNCCLKKYDKVEEILREFYD 176
            RFV+S  PG+   I AE  G ++VFKL TT+S   M+AFD N CL+++    +IL+E+Y 
Sbjct: 947  RFVISFAPGEFERIHAEEGGFYRVFKLTTTLSTNQMHAFDQNNCLRRFPTAIDILKEYYK 1006

Query: 177  LRVKYYVRRKDYLEGQLQAEADKLSNQARFIL*KCDKGLVVENKKRKAMVEELIKRGYAP 356
            LR +YY RR+D+L GQL A+AD+LS+QARFIL KC+K LVVENK+RKAM +EL+KRGY P
Sbjct: 1007 LRREYYARRRDFLVGQLTAQADRLSDQARFILEKCEKKLVVENKQRKAMCDELLKRGYRP 1066

Query: 357  DPIADWKKRASKIQGLTA-LXXXXXXXXXXXXXXXXXXXXXXXXXXAFQQLKEVKKFNYS 533
            DP+ +W++R        A                            AF++L +VKKF+Y 
Sbjct: 1067 DPVKEWQRRIKMEDAEQADEEDEEEEEAAPSVSSKAKKEKEVDPEKAFKKLTDVKKFDYL 1126

Query: 534  AG 539
             G
Sbjct: 1127 LG 1128



 Score = 47.6 bits (108), Expect = 2e-05
 Identities = 23/39 (58%), Positives = 26/39 (66%)
 Frame = +1

Query: 532  LLGMSMWMLTKXKKDELLKQRDQXXXXXXXXKNKTAPML 648
            LLGMSMWMLT+ KK+ELLKQRD         + KT  ML
Sbjct: 1126 LLGMSMWMLTEEKKNELLKQRDTKLSELESLRKKTPEML 1164


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,932,759
Number of Sequences: 53049
Number of extensions: 388598
Number of successful extensions: 929
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)