Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2097
         (747 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ...    28   1.6  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    28   1.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.7  
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   8.7  

>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 146 AMLDALGLILYRPNSTQLQVLRNSGKCKSAA 238
           ++   L +IL  PNS++LQ LR  G C + +
Sbjct: 544 SLFSTLRIILEHPNSSRLQKLRAPGLCPNGS 574


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 457 IMWEVLELAADLMLCWCLKMHFATLNFQCVNSVTTMTYNAS 579
           I+W + E +A + L   LKM +  LNF CV S+     +A+
Sbjct: 334 IIWALFEFSA-VALFIRLKMKYPPLNFPCVFSIICTAVSAN 373


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 167 LILYRPNSTQLQVLRNSGKCKSAAAGENG 253
           L LYRPNS  L+   +  +  S ++GE G
Sbjct: 467 LALYRPNSLALKNQSSHRRNSSTSSGETG 495


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 530 SVAKCIFKHQHSIRSAASSNTSHIITHILQA 438
           S+ KC+  ++        S  SHII+H+++A
Sbjct: 54  SILKCLHCNKWFCNVRGKSGASHIISHLVRA 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,324,036
Number of Sequences: 5004
Number of extensions: 35119
Number of successful extensions: 75
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)