Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2097
         (747 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646           30   1.7  
02_05_0504 - 29590852-29591862                                         29   5.2  
03_01_0095 + 759530-760123                                             28   6.9  
03_01_0060 - 487802-487882,487962-488195,488570-488629                 28   6.9  
12_02_1147 - 26459481-26460124,26460241-26460382,26461658-264616...    28   9.1  
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    28   9.1  

>12_01_0784 + 7167051-7167509,7168161-7168276,7168788-7169646
          Length = 477

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 202 LKLG*-VRPVENESERVEHGAAGGERDAREEVAGEVPAGSSAAPCTGRAS 56
           L+LG  V P+   + RV   A GG++    EV G+ PA ++AA   G+AS
Sbjct: 35  LRLGLYVIPLGEGALRVCGAALGGDQFDGGEVGGDDPAAAAAAEARGKAS 84


>02_05_0504 - 29590852-29591862
          Length = 336

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
 Frame = -3

Query: 181 PVENESERVEHGAAGGERDAREEVA------GEVPAGSSAAPCTG 65
           P+E E E V   AAGGE  A+++VA      G+ PA S ++  TG
Sbjct: 250 PLEGEEEEVAAPAAGGE--AQDQVAQSAGPPGQQPAASQSSGVTG 292


>03_01_0095 + 759530-760123
          Length = 197

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 148 GAAGGERDAREEVAGEVPAGSSAAPCTGRASN*CKAPLCFPLTP 17
           G  GG  D R++    VP  ++AAP  G A+    AP+  P+ P
Sbjct: 86  GRGGGSDDGRQDGVA-VPVRAAAAPGGGAAAPRRSAPVRVPMWP 128


>03_01_0060 - 487802-487882,487962-488195,488570-488629
          Length = 124

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -3

Query: 136 GERDAREEVAGEVPAGSSAAPCTGRASN*CKAPL 35
           GER+  EE+A +  AG  AA  +G A     AP+
Sbjct: 26  GEREGEEEMASQGSAGGGAAASSGVAVTITTAPM 59


>12_02_1147 -
           26459481-26460124,26460241-26460382,26461658-26461699,
           26463377-26463502
          Length = 317

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
 Frame = -3

Query: 181 PVENESERVEH------GAAGGERDAREEVAGEVPAGSSAAPCT 68
           PVEN +++  H       AA   +++     G++PAG+SA  CT
Sbjct: 274 PVENSADKGPHQDSQPPSAAAPAKESSPVNNGQLPAGASAVKCT 317


>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           H   R+  T  +A L   GL+    NST+LQ L+   +  S     +  AL+ +  +M  
Sbjct: 9   HVLARIPETAQQAFL-RWGLLRDSSNSTKLQHLQEWQEMYSPCFWMDAFALIHLIFIMSI 67

Query: 290 MLQFKY 307
           ++QF Y
Sbjct: 68  LVQFLY 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,097,102
Number of Sequences: 37544
Number of extensions: 289899
Number of successful extensions: 897
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)