Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2097
         (747 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT021376-1|AAX33524.1|  758|Drosophila melanogaster LD46788p pro...    52   8e-07
AY069694-1|AAL39839.1|  843|Drosophila melanogaster LD46629p pro...    52   8e-07
AE014298-972|AAF46216.3|  758|Drosophila melanogaster CG33691-PA...    52   8e-07
AE014298-971|AAZ52507.1|  702|Drosophila melanogaster CG33691-PC...    52   8e-07
AE014298-970|AAO41636.1|  843|Drosophila melanogaster CG33691-PB...    52   8e-07
AY880250-1|AAX11177.1|  407|Drosophila melanogaster ligand-gated...    29   6.7  
AY880249-1|AAX11176.1|  432|Drosophila melanogaster ligand-gated...    29   6.7  
AE014296-2588|ABC66135.2|  762|Drosophila melanogaster CG33989-P...    29   6.7  
AE014296-2587|AAF49571.3|  737|Drosophila melanogaster CG33989-P...    29   6.7  

>BT021376-1|AAX33524.1|  758|Drosophila melanogaster LD46788p
           protein.
          Length = 758

 Score = 52.0 bits (119), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           +FFP V L  C+ +++ALG+ LY+ N  Q+Q+L    +       EN M LVQVRD++ +
Sbjct: 682 NFFPSVPLDHCKRLIEALGVELYKANRRQVQILMEYDR----NYNEN-MPLVQVRDIIKY 736

Query: 290 MLQFKYMLR 316
           M Q  +M R
Sbjct: 737 MTQLTFMTR 745



 Score = 35.9 bits (79), Expect = 0.059
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PXKVQKALVENTMVPCINSKPYQYTELLMT 90
           P KV K  V+  +VPCIN K Y  +E LMT
Sbjct: 646 PYKVLKVCVDKHLVPCINMKAYNESEQLMT 675


>AY069694-1|AAL39839.1|  843|Drosophila melanogaster LD46629p
           protein.
          Length = 843

 Score = 52.0 bits (119), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           +FFP V L  C+ +++ALG+ LY+ N  Q+Q+L    +       EN M LVQVRD++ +
Sbjct: 767 NFFPSVPLDHCKRLIEALGVELYKANRRQVQILMEYDR----NYNEN-MPLVQVRDIIKY 821

Query: 290 MLQFKYMLR 316
           M Q  +M R
Sbjct: 822 MTQLTFMTR 830



 Score = 35.9 bits (79), Expect = 0.059
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PXKVQKALVENTMVPCINSKPYQYTELLMT 90
           P KV K  V+  +VPCIN K Y  +E LMT
Sbjct: 731 PYKVLKVCVDKHLVPCINMKAYNESEQLMT 760


>AE014298-972|AAF46216.3|  758|Drosophila melanogaster CG33691-PA,
           isoform A protein.
          Length = 758

 Score = 52.0 bits (119), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           +FFP V L  C+ +++ALG+ LY+ N  Q+Q+L    +       EN M LVQVRD++ +
Sbjct: 682 NFFPSVPLDHCKRLIEALGVELYKANRRQVQILMEYDR----NYNEN-MPLVQVRDIIKY 736

Query: 290 MLQFKYMLR 316
           M Q  +M R
Sbjct: 737 MTQLTFMTR 745



 Score = 35.9 bits (79), Expect = 0.059
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PXKVQKALVENTMVPCINSKPYQYTELLMT 90
           P KV K  V+  +VPCIN K Y  +E LMT
Sbjct: 646 PYKVLKVCVDKHLVPCINMKAYNESEQLMT 675


>AE014298-971|AAZ52507.1|  702|Drosophila melanogaster CG33691-PC,
           isoform C protein.
          Length = 702

 Score = 52.0 bits (119), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           +FFP V L  C+ +++ALG+ LY+ N  Q+Q+L    +       EN M LVQVRD++ +
Sbjct: 626 NFFPSVPLDHCKRLIEALGVELYKANRRQVQILMEYDR----NYNEN-MPLVQVRDIIKY 680

Query: 290 MLQFKYMLR 316
           M Q  +M R
Sbjct: 681 MTQLTFMTR 689



 Score = 35.9 bits (79), Expect = 0.059
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PXKVQKALVENTMVPCINSKPYQYTELLMT 90
           P KV K  V+  +VPCIN K Y  +E LMT
Sbjct: 590 PYKVLKVCVDKHLVPCINMKAYNESEQLMT 619


>AE014298-970|AAO41636.1|  843|Drosophila melanogaster CG33691-PB,
           isoform B protein.
          Length = 843

 Score = 52.0 bits (119), Expect = 8e-07
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +2

Query: 110 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 289
           +FFP V L  C+ +++ALG+ LY+ N  Q+Q+L    +       EN M LVQVRD++ +
Sbjct: 767 NFFPSVPLDHCKRLIEALGVELYKANRRQVQILMEYDR----NYNEN-MPLVQVRDIIKY 821

Query: 290 MLQFKYMLR 316
           M Q  +M R
Sbjct: 822 MTQLTFMTR 830



 Score = 35.9 bits (79), Expect = 0.059
 Identities = 16/30 (53%), Positives = 19/30 (63%)
 Frame = +1

Query: 1   PXKVQKALVENTMVPCINSKPYQYTELLMT 90
           P KV K  V+  +VPCIN K Y  +E LMT
Sbjct: 731 PYKVLKVCVDKHLVPCINMKAYNESEQLMT 760


>AY880250-1|AAX11177.1|  407|Drosophila melanogaster ligand-gated
           ion channel pHCl-C protein.
          Length = 407

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 184 RPVENESERVEHGAAGGERDAREEVAGEVPAGSSAAPCTGRASN*CKAPLCF 29
           RP EN     + G       A  E+      G S +PCT  A+N C    CF
Sbjct: 313 RPGENPV--TQPGEKRQNAGAPNEIVACTTCGGSNSPCTHSANNGCATETCF 362


>AY880249-1|AAX11176.1|  432|Drosophila melanogaster ligand-gated
           ion channel pHCl-B protein.
          Length = 432

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 184 RPVENESERVEHGAAGGERDAREEVAGEVPAGSSAAPCTGRASN*CKAPLCF 29
           RP EN     + G       A  E+      G S +PCT  A+N C    CF
Sbjct: 338 RPGENPV--TQPGEKRQNAGAPNEIVACTTCGGSNSPCTHSANNGCATETCF 387


>AE014296-2588|ABC66135.2|  762|Drosophila melanogaster CG33989-PE,
           isoform E protein.
          Length = 762

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 184 RPVENESERVEHGAAGGERDAREEVAGEVPAGSSAAPCTGRASN*CKAPLCF 29
           RP EN     + G       A  E+      G S +PCT  A+N C    CF
Sbjct: 668 RPGENPV--TQPGEKRQNAGAPNEIVACTTCGGSNSPCTHSANNGCATETCF 717


>AE014296-2587|AAF49571.3|  737|Drosophila melanogaster CG33989-PD,
           isoform D protein.
          Length = 737

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = -3

Query: 184 RPVENESERVEHGAAGGERDAREEVAGEVPAGSSAAPCTGRASN*CKAPLCF 29
           RP EN     + G       A  E+      G S +PCT  A+N C    CF
Sbjct: 643 RPGENPV--TQPGEKRQNAGAPNEIVACTTCGGSNSPCTHSANNGCATETCF 692


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,909,158
Number of Sequences: 53049
Number of extensions: 476141
Number of successful extensions: 1391
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1316
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1385
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)