Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2096
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 193 2e-50
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 186 2e-48
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 34 0.020
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy... 30 0.33
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 28 1.3
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 1.3
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 27 2.3
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi... 27 3.1
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos... 25 7.2
SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces p... 25 9.5
SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces... 25 9.5
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 193 bits (471), Expect = 2e-50
Identities = 97/170 (57%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
Frame = +2
Query: 146 SVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELXNEERNLLSVAYKNVVXARRSSW 325
+ +E+ V AKLAEQAERY+ M MK V T EL EERNLLSVAYKNV+ ARR+SW
Sbjct: 3 TTSREDAVYLAKLAEQAERYEGMVENMKSVASTDQELTVEERNLLSVAYKNVIGARRASW 62
Query: 326 RVISSIEQKTE--GSERKQQMAKEYRVKXEKELREICYDVLGLLDKHLIPKASNPESKVX 499
R++SSIEQK E G+ + ++ KEYR K E+EL IC D+L +L+KHLIP A++ ESKV
Sbjct: 63 RIVSSIEQKEESKGNTAQVELIKEYRQKIEQELDTICQDILTVLEKHLIPNAASAESKVF 122
Query: 500 YLKMKGDYYRYLAEVATGETRHSVVXDXXKAYQDAFEISKAXMXPTHPIR 649
Y KMKGDYYRYLAE A GE R + Y+ A EI+ A + PTHPIR
Sbjct: 123 YYKMKGDYYRYLAEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIR 172
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 186 bits (453), Expect = 2e-48
Identities = 95/171 (55%), Positives = 119/171 (69%), Gaps = 2/171 (1%)
Frame = +2
Query: 143 MSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELXNEERNLLSVAYKNVVXARRSS 322
MS +E V AKLAEQAERY++M MK+V + +L EERNLLSVAYKN++ ARR+S
Sbjct: 1 MSNSRENSVYLAKLAEQAERYEEMVENMKKVACSNDKLSVEERNLLSVAYKNIIGARRAS 60
Query: 323 WRVISSIEQKTE--GSERKQQMAKEYRVKXEKELREICYDVLGLLDKHLIPKASNPESKV 496
WR+ISSIEQK E G+ R+ + KEYR K E EL +IC+DVL +L+KHLIP A+ ESKV
Sbjct: 61 WRIISSIEQKEESRGNTRQAALIKEYRKKIEDELSDICHDVLSVLEKHLIPAATTGESKV 120
Query: 497 XYLKMKGDYYRYLAEVATGETRHSVVXDXXKAYQDAFEISKAXMXPTHPIR 649
Y KMKGDYYRYLAE GE +AY+ A +I+ A + PT P+R
Sbjct: 121 FYYKMKGDYYRYLAEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMR 171
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 33.9 bits (74), Expect = 0.020
Identities = 25/104 (24%), Positives = 44/104 (42%)
Frame = +2
Query: 119 IISLPSSTMSVDKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELXNEERNLLSVAYKN 298
I+S+ S S EEL+ R + + Y+ MA + E E ++ + LLS Y N
Sbjct: 2998 IMSITMSDSSAYGEELM-RERFEHLLKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDN 3056
Query: 299 VVXARRSSWRVISSIEQKTEGSERKQQMAKEYRVKXEKELREIC 430
+R+ + +E+ + EY E+ L++ C
Sbjct: 3057 EAYQAELFYRLSNCVEKVLHNKISITDLKTEYEEILEQTLKKEC 3100
>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 29.9 bits (64), Expect = 0.33
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Frame = +2
Query: 146 SVDKEELVQRAKLAEQAERYDDMAAAMKEVT--ETGVELXNEERN-LLSVAYKNVVXARR 316
SV + ++ K ++ E + ++ + +K V+ ET E+ N+E N LL + YK V
Sbjct: 3 SVSNVSVNEQGKFNDKEEGFSNLKS-LKHVSHSETDFEVSNDEDNQLLELGYKPVFKREF 61
Query: 317 SSWRVIS 337
S+W S
Sbjct: 62 STWATFS 68
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Frame = +2
Query: 152 DKEELVQRAKLAEQAERYDDMAAAMKEVTETGVELXNEERNLLSVAYKNVVXARRSSWRV 331
+K+E QR + Q R D M + +G + + SV+ + +R S+
Sbjct: 320 EKQEKEQRLFMLAQKAREDRMG---RNAASSGPS--HAKPRSTSVSSEERSRSRAGSFSH 374
Query: 332 ISSIEQKTEGSE---RKQQMAKEYRVKXEKELR 421
S E + E SE R+Q++ +E R + EK+LR
Sbjct: 375 HSESENEDEDSEAFRRRQELRRERRRQAEKDLR 407
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 78 LVRLSASFTRGISELFLFHRPRCPSTRKNWCNVPNW 185
LV + F G+ + L RC +T CNVP W
Sbjct: 685 LVACTTHFYEGVRKSALSSLWRCATTYYKVCNVPQW 720
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 446 LLDKHLIPKASNPESKVXYLKMKGDYYR---YLAEVATGETRHSVVXD 580
+++K IP++ E+K Y + GD+ +L E A E H V+ D
Sbjct: 1608 MIEKLCIPESWLNEAKALYARYVGDHLNELYFLQEAALYEDAHKVLLD 1655
>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
Usp107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 347 QKTEGSERKQQMAKEYRVKXEKELREICYDVLGLLDKHLIPK 472
+K + + KEY K +++LR+ D+ LL KH I +
Sbjct: 328 EKQRSKDEYASLYKEYTRKEQEKLRKQNDDLQNLLSKHRISR 369
>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 127 RNNSLMPLVKEADKRTSAILIQLAQRATLTQHATSTLR 14
R+NS P+ AD + S I +A+ +T TLR
Sbjct: 128 RSNSFSPIQVLADAKDSVSSIDIAEHLIVTGSTDGTLR 165
>SPAC13G7.08c |crb3||WD repeat protein Crb3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 446
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 233 VTETGVELXNEERNLLSVAYKNVVXARRSSWRVISSIEQKTEGSERKQQMAK 388
+ + GVE + N+L ++ V SSWR K E SE + + AK
Sbjct: 381 IQDDGVEQLMQPENILKISSDIVTQGSESSWRA------KAETSEMQLKEAK 426
>SPBC2F12.12c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.0 bits (52), Expect = 9.5
Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 7/126 (5%)
Frame = +2
Query: 167 VQRAKLAEQAERYDDMAAAMKEVTETGVELXNEER-NLLSV--AYKNVVXARRSSWRVIS 337
VQR + E+ + + A +++ ++ V L + +LL+ +YK + +++ +
Sbjct: 186 VQRILAPKSFEQLEQLEAQIQKKLKSNVPLDTDYWVDLLNSLKSYKAIAYLKKTFNEELQ 245
Query: 338 SIEQKTEGSERKQQMAKEYRVKXEKELREICY----DVLGLLDKHLIPKASNPESKVXYL 505
+ K + E + + ++ K+ E Y D +L IP+ PE + Y
Sbjct: 246 IRKNKLDNEEWDKAFSDAKKLSNMKDREEKLYIVPIDPKPILRAQAIPRRIQPEEQADYE 305
Query: 506 KMKGDY 523
K D+
Sbjct: 306 KELNDH 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,366,157
Number of Sequences: 5004
Number of extensions: 41598
Number of successful extensions: 134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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