Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2095
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    29   0.71 
SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2 |Schizo...    27   2.2  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.7  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    25   8.7  

>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 687 CRVVSANSLFPVEQVFQIERSLLYLVFVXRSAEF 586
           C V+S N++ PV QVF++   + YL+     A F
Sbjct: 465 CLVLSRNAVSPVPQVFEVCCDIFYLMVFSLRAHF 498


>SPAC5H10.13c |gmh2||alpha-1,2-galactosyltransferase Gmh2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 346

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +1

Query: 523 VDVEIESKLNQVKDNNGKDHLK--LGTPSYKYKIEKTTFD 636
           VDV++ SK+NQ+ D      L   +GTPS  +  E    D
Sbjct: 34  VDVDLVSKVNQLYDQQIAPMLSDAIGTPSVNHSFELAPLD 73


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 570 RKRSFKTRHSFXQIQDREDYVRFEKLV 650
           +KR    RHS  Q++D ED V  E +V
Sbjct: 16  KKRLLSRRHSSYQVRDEEDDVLEEFIV 42


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +1

Query: 481 QIKGKGDALINCVNVDVEIESKLNQVKDNNGKDHLKLGTPS 603
           Q+  +G  ++N   V+  +ES L  ++     +H++  TP+
Sbjct: 456 QLVAEGKIIVNVNGVEHTVESDLVTIEKRKHTEHIRTYTPN 496


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,577,892
Number of Sequences: 5004
Number of extensions: 44751
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)