Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2095
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0260 + 26736631-26736771,26736850-26736981,26737066-267372...    30   2.3  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    28   6.9  
01_06_1089 - 34451982-34452670,34452755-34452814,34453287-344533...    28   6.9  
04_03_0037 - 9991176-9991268,9991403-9991474,9991569-9991928,999...    28   9.1  
02_03_0084 - 15041261-15041437,15041625-15041765,15042857-150429...    28   9.1  

>05_06_0260 +
           26736631-26736771,26736850-26736981,26737066-26737248,
           26737344-26737370,26737482-26737689,26737863-26737944,
           26738097-26738205,26738324-26738443,26738567-26738884
          Length = 439

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -3

Query: 292 SSXCXGSVXXTSSSGIPFVXSGTLFSICXLMHCSRFSLENSQASMYGGRYAS 137
           S+   G +  T  +G         F+      CS+ SLEN   +M GG+ AS
Sbjct: 337 SAVTVGEISYTDITGTSASERAVTFACSEAAPCSKLSLENVNITMAGGQNAS 388


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 400 HGNFKLAFISNMSLTAEYEADGKLLILQIKGKGDALINCVNVDVEIESKLNQVKDNNGKD 579
           +G  ++AF +   L A  E   K L+ +  GKG   +  V   VEI   L   ++NN  D
Sbjct: 88  YGTKQIAFCNYTDLEAFTEEKRKSLLAKRHGKGADFVRAVKEIVEIYDSLKN-ENNNKSD 146


>01_06_1089 -
           34451982-34452670,34452755-34452814,34453287-34453352,
           34454055-34454253,34454470-34454719,34454830-34454898,
           34455733-34455804,34456027-34456168,34456544-34457064,
           34457166-34457739,34459164-34459269
          Length = 915

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +3

Query: 615 DREDYVRFEKLVQRETKNWLTQPCSLPMENWQQL 716
           D  DY++  K     T+NW   PCS    +WQ L
Sbjct: 399 DDVDYMKEVKKYYSYTRNWNGDPCSPREYSWQGL 432


>04_03_0037 -
           9991176-9991268,9991403-9991474,9991569-9991928,
           9992466-9992555,9992692-9992782,9993530-9993729,
           9998024-9998101,9998196-9998312,10000017-10000112,
           10000192-10000317,10000533-10000629,10000979-10001023,
           10002106-10002179,10002267-10002350,10002439-10002522,
           10002660-10002851,10003775-10003903,10004061-10004093,
           10004190-10004286,10004833-10004883,10005211-10005289,
           10005480-10005552,10005595-10005691,10006392-10006473,
           10008345-10008691,10010271-10010535,10010624-10010743,
           10010971-10011358
          Length = 1219

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 728 RSSHELLPILH-WQTAGLCQPILCFPLNKF 642
           RS  ++ PI+H W    +C  +LC   NK+
Sbjct: 647 RSIDQIAPIIHEWTYDAMCHDLLCMDGNKY 676


>02_03_0084 -
           15041261-15041437,15041625-15041765,15042857-15042946,
           15043111-15043201,15043953-15044155,15045361-15045438,
           15045535-15045651,15046111-15046161,15046405-15046500,
           15046726-15046742,15046938-15047064,15050585-15050681,
           15051565-15051638,15051910-15051993,15052099-15052290,
           15054191-15054319,15055607-15055639,15055747-15055843,
           15055940-15055990,15057494-15057564,15058305-15058455,
           15058625-15058703,15059265-15059346,15060335-15060335,
           15060565-15060620,15060969-15061018,15061511-15061580
          Length = 834

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -2

Query: 728 RSSHELLPILH-WQTAGLCQPILCFPLNKF 642
           RS  ++ PI+H W    +C  +LC   NK+
Sbjct: 350 RSVDQIAPIIHEWTYDAMCHDLLCMDGNKY 379


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,724
Number of Sequences: 37544
Number of extensions: 270640
Number of successful extensions: 552
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)