Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2094
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy... 228 7e-61
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|... 220 1e-58
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom... 213 3e-56
SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|... 29 0.64
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces... 29 0.64
SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 28 1.1
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 2.6
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 3.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 4.5
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 4.5
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 6.0
>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 228 bits (557), Expect = 7e-61
Identities = 108/199 (54%), Positives = 144/199 (72%)
Frame = +3
Query: 102 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 281
SK+ PES+LK +K +E R R+ +++++ KK+ I KRAE Y EYR ER+
Sbjct: 10 SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEYRKAERE 69
Query: 282 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 461
+I L R+AR GNYYVP E KL FVIRIRGIN + PK RK++QL RL QINNGVFV+ NK
Sbjct: 70 QIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLLRLIQINNGVFVKFNK 129
Query: 462 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 641
AT ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E L K++I+ +
Sbjct: 130 ATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALGKYSILSI 189
Query: 642 XDLIHEIFTVGEKXKYASN 698
DLIHEI+TVG K A+N
Sbjct: 190 EDLIHEIYTVGPNFKQAAN 208
>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 250
Score = 220 bits (538), Expect = 1e-58
Identities = 103/192 (53%), Positives = 139/192 (72%)
Frame = +3
Query: 123 PESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 302
PES+LK K ++ R + +++S+ KK+ I KRAE Y EYR ER++I LAR+
Sbjct: 16 PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEYRAAEREQIELARK 75
Query: 303 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 482
AR GNY+VP E KL FV+RIRGIN + PK RK++QL RL QINNG+FV+ NKA ML+
Sbjct: 76 ARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLLRLLQINNGIFVKFNKAIKEMLQ 135
Query: 483 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVXDLIHEI 662
+ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E L K++I+ V DLIHEI
Sbjct: 136 VVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALGKYSILSVEDLIHEI 195
Query: 663 FTVGEKXKYASN 698
+TVG K A+N
Sbjct: 196 YTVGPNFKQAAN 207
>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
L7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 249
Score = 213 bits (519), Expect = 3e-56
Identities = 96/188 (51%), Positives = 135/188 (71%)
Frame = +3
Query: 123 PESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQ 302
PE +LK RK E R R++ + ++ + K ++E FKRAE ++ YR +ER+ IRL R
Sbjct: 15 PEVLLKKRKVNERTRKERVEQAIAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRS 74
Query: 303 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNMLR 482
A+N+G+ +VP E KL FVIRI G+ + PK+RKVL+L RL +INN VFVR NKA MLR
Sbjct: 75 AKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLLRLSRINNAVFVRNNKAVAQMLR 134
Query: 483 IAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVXDLIHEI 662
I EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L K+++I + D+IHEI
Sbjct: 135 IVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALGKYDVISIEDIIHEI 194
Query: 663 FTVGEKXK 686
+ VG K
Sbjct: 195 YNVGSHFK 202
>SPBC1861.01c |cnp3|SPBC56F2.13|CENP-C|Schizosaccharomyces pombe|chr
2|||Manual
Length = 643
Score = 29.1 bits (62), Expect = 0.64
Identities = 26/109 (23%), Positives = 45/109 (41%), Gaps = 2/109 (1%)
Frame = +3
Query: 99 DSKKLPAVPE--SVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 272
D ++PA+PE +++ ++R R + KR IK E V+EY
Sbjct: 441 DENRIPALPEVKQIIRVDDPSPSIRQGRKKRHAKRSGVEIKSNLEA---KSNDVEEYDAF 497
Query: 273 ERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFR 419
+DEI + N N E + + + + Q+S + K LF+
Sbjct: 498 YKDEINCEVLSWNEQNPKASEERVVGYSLPSVNLQQISNQQLKFASLFK 546
>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 224
Score = 29.1 bits (62), Expect = 0.64
Identities = 11/39 (28%), Positives = 25/39 (64%)
Frame = +3
Query: 204 SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 320
+++K+ REI ++ E+ +R+K ++ ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189
>SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 427
Score = 28.3 bits (60), Expect = 1.1
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 102 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIK-KKREIFKRAEQYVKEYRIKER 278
+K LP++ E R+ REA R R Q ++S + ++R+ F RAE+ E KE+
Sbjct: 241 AKHLPSL-ERFRSEREAREAARELRRQQDNAYQASLARDRERQAFARAEE---ERLAKEK 296
Query: 279 DEIRLARQARNR 314
+E + ++ + +
Sbjct: 297 EEREIVQKKKKQ 308
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +3
Query: 303 ARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 422
+ N+G YY G +AFV I G+ + SP++ LQL ++
Sbjct: 1133 SENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = +3
Query: 90 GKEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRI 269
GK LP L + +E R+ +L+ K R + ++KR I + + +++ +
Sbjct: 90 GKGPRGPLPKPFHERLAEARNQERKRSDKLKTMKKNRKQSFQRKRNILEDGKSEEEKFPM 149
Query: 270 KERDEIRLARQA 305
K + +RQA
Sbjct: 150 KCDEIDPYSRQA 161
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +3
Query: 237 RAEQYVKEYRIKERDEIRLARQARNRGNYYVPGE 338
+A Q ++ + +RL N+ N+++PGE
Sbjct: 309 KATQMTVDFLVDWAKSVRLCANRFNKSNFFIPGE 342
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/65 (21%), Positives = 34/65 (52%)
Frame = +3
Query: 126 ESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQA 305
+ + ++R E R R + KR + ++ ++ +R ++ + E KE++ IRL +
Sbjct: 99 QRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQ 158
Query: 306 RNRGN 320
+++ N
Sbjct: 159 KHKEN 163
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = +1
Query: 85 SKGRKTVRSCLLYQSQCSSIVRGERLFALXDYRLR*RGVLLPSRRRGKSSRGLNSTSR 258
S+G+ ++C L+Q+ C R R + + G+ LP + K G S R
Sbjct: 18 SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,712
Number of Sequences: 5004
Number of extensions: 55032
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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