Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2094
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 241 4e-64
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 228 3e-60
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 147 6e-36
05_07_0329 - 29308867-29308932,29309040-29309159,29309245-293093... 31 0.88
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 2.0
01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794 29 2.7
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767... 29 3.5
12_02_0227 - 15894357-15894494,15894587-15894655,15894837-158949... 29 4.7
03_01_0437 + 3390099-3392570 29 4.7
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 6.2
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 8.2
01_01_0672 + 5147916-5147976,5148087-5148166,5148329-5148973,514... 28 8.2
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 241 bits (590), Expect = 4e-64
Identities = 111/197 (56%), Positives = 148/197 (75%)
Frame = +3
Query: 108 KLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 287
K VPESVLK RKR E R + L + A++ ++ IF RA+QY +EY +E++ +
Sbjct: 7 KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEYDAQEKELV 66
Query: 288 RLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKAT 467
+L R+AR +G +YV EAKL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT
Sbjct: 67 QLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKAT 126
Query: 468 VNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICVXD 647
+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L KH+IIC+ D
Sbjct: 127 INMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLGKHDIICIED 186
Query: 648 LIHEIFTVGEKXKYASN 698
L+HEI TVG K A+N
Sbjct: 187 LVHEIMTVGPHFKEANN 203
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 228 bits (558), Expect = 3e-60
Identities = 107/199 (53%), Positives = 146/199 (73%), Gaps = 6/199 (3%)
Frame = +3
Query: 120 VPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLAR 299
VPESVL+ RKR E + + + +I+ ++ IF RA+QY +EY +E++ ++L R
Sbjct: 10 VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKR 69
Query: 300 QARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATVNML 479
+AR +G +YV E KL FV+RIRGIN + PK RK+LQL RLRQI NGVF+++NKAT+NML
Sbjct: 70 EARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLLRLRQIFNGVFLKVNKATINML 129
Query: 480 RIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR------LHKHNIICV 641
R EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+ L KH+IIC+
Sbjct: 130 RRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWCLYQGLGKHDIICI 189
Query: 642 XDLIHEIFTVGEKXKYASN 698
DL+HEI TVG K A+N
Sbjct: 190 EDLVHEIMTVGPHFKEANN 208
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 147 bits (357), Expect = 6e-36
Identities = 78/205 (38%), Positives = 122/205 (59%), Gaps = 3/205 (1%)
Frame = +3
Query: 93 KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIK 272
+E +++LP V E+VLK RK E + +R + KR E +V+E+R K
Sbjct: 3 EEGTQQLPYVRETVLKKRKVNEDWAVKNRERKAAKRQRRRDDGKGAIKRPEDFVREFRNK 62
Query: 273 ERDEIRLARQARNRGNYYVPGE---AKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGV 443
E D +R+ + + R P E +KL F IRI G + P +R++L+ RL Q+ GV
Sbjct: 63 ELDFVRMKTRLKVRK--LPPAETLNSKLVFAIRIPGTMDLHPHMRRILRKLRLTQVLTGV 120
Query: 444 FVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHK 623
F++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L +
Sbjct: 121 FLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALGE 180
Query: 624 HNIICVXDLIHEIFTVGEKXKYASN 698
+ IIC+ DL+HEI +VG + ASN
Sbjct: 181 YGIICLEDLVHEIASVGPHFREASN 205
>05_07_0329 -
29308867-29308932,29309040-29309159,29309245-29309364,
29309566-29310123,29310199-29310258,29310839-29310904,
29310993-29311103,29311167-29311257,29311349-29311449,
29311534-29311641,29311737-29314205
Length = 1289
Score = 31.1 bits (67), Expect = 0.88
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +3
Query: 87 KGKEDSKKLPAVPESVLKH-RKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEY 263
KGK D KKLP KH R+ +EAL +R+ + +KKRE +R + +E
Sbjct: 413 KGKVDMKKLP-------KHVREMQEAL--------ARRQEAEERKKREEEERLRK-EEEE 456
Query: 264 RIKERDEIRLARQARNR 314
R+K+ +E R A +A+ R
Sbjct: 457 RLKKEEEERKAEEAKRR 473
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 186 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 326
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>01_01_0677 + 5201089-5201177,5201325-5202183,5202321-5202794
Length = 473
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 126 ESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVK--EYRIKERDEIRLAR 299
+ ++ RKRRE L L + + K K I RA +YVK E ++ E +E
Sbjct: 288 QHMISERKRREKLNDSFLALKAVLPPGSKKDKTSILIRAREYVKSLESKLSELEEKNREL 347
Query: 300 QAR 308
+AR
Sbjct: 348 EAR 350
>04_03_0554 -
17075142-17075159,17075788-17076591,17076619-17076719,
17077095-17077751,17077827-17078768,17078837-17078896,
17079131-17079763,17079886-17079942,17080177-17080702
Length = 1265
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 147 KRREALRTXRLQVTLKRRSSAIKKKREIFKR 239
+RR+ R Q+TL+ + +KK+RE +KR
Sbjct: 219 RRRQRDRERYAQMTLQEKEEKLKKRREAYKR 249
>12_02_0227 -
15894357-15894494,15894587-15894655,15894837-15894902,
15895130-15895219,15895312-15895408,15896449-15896771
Length = 260
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/76 (30%), Positives = 36/76 (47%)
Frame = +3
Query: 99 DSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKER 278
D +K PE +++ + REA+ TL++ S IK+K E + + Q E R +R
Sbjct: 179 DEEKTITDPELLMEMMEIREAVNDANDSQTLEKIQSQIKRKLETWSHSFQEAFERRDFDR 238
Query: 279 DEIRLARQARNRGNYY 326
A +A R YY
Sbjct: 239 -----AVKATQRMRYY 249
>03_01_0437 + 3390099-3392570
Length = 823
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/61 (24%), Positives = 37/61 (60%)
Frame = +3
Query: 111 LPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIR 290
+PA+ E++ ++ EALR R ++ + R+ +K++++ ++RA + +R + R E+
Sbjct: 82 IPAMLEALERNEDIGEALRPWRDTMSNRERTIILKEQKD-WRRAVEIFNWFRRRRRHEVN 140
Query: 291 L 293
+
Sbjct: 141 V 141
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 331 PGKPNWHLSSESVVSTKFHRRSVKFCNCLDCAK 429
PG+ NW S +V TK R+S + N +D A+
Sbjct: 100 PGQANWFPDSNLLVDTKGRRQSRRIKNLMDEAE 132
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 8.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +2
Query: 494 LHCLGIPQLKECP*VSIQTWIRQAEW 571
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
>01_01_0672 +
5147916-5147976,5148087-5148166,5148329-5148973,
5149111-5149341
Length = 338
Score = 27.9 bits (59), Expect = 8.2
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 126 ESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVK--EYRIKERDEIRLAR 299
+ + RKRRE L + + + K K I RA +YVK E ++ E +E
Sbjct: 234 QHTMSERKRREKLNDSFVALKAVLPPGSKKDKTSILIRAREYVKSLESKLSELEEKNREL 293
Query: 300 QAR 308
+AR
Sbjct: 294 EAR 296
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,261,964
Number of Sequences: 37544
Number of extensions: 350952
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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