Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2094
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   246   1e-65
Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical pr...    34   0.11 
Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical pr...    31   1.0  
U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    29   4.2  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    28   5.6  
AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical pr...    28   7.4  
Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical p...    28   7.4  
Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical...    28   7.4  
Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  246 bits (602), Expect = 1e-65
 Identities = 115/199 (57%), Positives = 152/199 (76%)
 Frame = +3

Query: 102 SKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERD 281
           +KK+P VPE+VLK RK+R   RT   Q  +   +   +KK + FKRAE+YV+EYR  +++
Sbjct: 4   TKKVPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKE 63

Query: 282 EIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNK 461
            +RL R+A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNK
Sbjct: 64  GLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNK 123

Query: 462 ATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLHKHNIICV 641
           AT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L K NIIC+
Sbjct: 124 ATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183

Query: 642 XDLIHEIFTVGEKXKYASN 698
            DL HEI TVG   K A+N
Sbjct: 184 EDLAHEIATVGPHFKEATN 202


>Z70204-3|CAA94113.1|  385|Caenorhabditis elegans Hypothetical
           protein C11G6.3 protein.
          Length = 385

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 87  KGKEDSKKLPAVPESVLKHR-KRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEY 263
           K + D+K++    E   K + KRRE  +  +  +  K RS   +K+RE+ +  E+  ++ 
Sbjct: 174 KAEMDAKRVAEEEEERRKEKEKRREEKKKQKELLKEKERSERKEKERELEREKEKSREKE 233

Query: 264 RIKERDEIRLARQARNR 314
           R KER++ R   + + R
Sbjct: 234 REKEREKEREKEREKER 250


>Z81066-5|CAB02969.1|  777|Caenorhabditis elegans Hypothetical
           protein F17B5.1a protein.
          Length = 777

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
 Frame = +3

Query: 87  KGKEDSKKLPAVPE-SVLKHRKRREAL---RTXRLQVTLKRRSSAIKKKREIFKRAEQYV 254
           K +E+  +L A  E  + +  KR++ L   R  + ++ +KR++   KKK+ + +  ++ +
Sbjct: 555 KQEEEEARLKAEEELKIYEEEKRKKELEEERKKKEELEIKRKAEEEKKKKALEEEKKRKI 614

Query: 255 KEYRIKERDEIRLARQA 305
            E + +++ E    +QA
Sbjct: 615 AEEKARQKQEKERKKQA 631


>U41106-1|AAA82409.1|  347|Caenorhabditis elegans Hypothetical
           protein W06A11.4 protein.
          Length = 347

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/57 (33%), Positives = 27/57 (47%)
 Frame = +1

Query: 214 RRRGKSSRGLNSTSRNTASRNVMKSD*PDKHAIVATTTFPGKPNWHLSSESVVSTKF 384
           ++R K SR     SR  ASR  +K     K    A +T P +PN +  S S  S ++
Sbjct: 21  KKRRKMSRKFTKKSRKRASRASIKLANEQKAKKYANSTVPMEPNVYTDSGSPFSNRY 77


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -3

Query: 512 VSPSNVRLGDT*HIHSSLIQTYKHTIVYLAQSKQLQNF 399
           ++PS  RL    H H+ L Q +++ I    Q K++Q F
Sbjct: 496 LAPSGTRLSTVRHTHTLLFQIWQYKINSFCQIKKIQFF 533


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 138 KHRK-RREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDE 284
           KHRK R++  +  +L+   KRR    +K+RE+   +++  KE   +  DE
Sbjct: 208 KHRKDRKKKEKKQKLKEMEKRREKLRQKERELLAVSDKVKKEEPAESSDE 257


>AC024809-5|AAF59544.3|  287|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.5 protein.
          Length = 287

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/41 (29%), Positives = 25/41 (60%)
 Frame = +3

Query: 126 ESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQ 248
           +  LK++KRR +  T  +Q T+KR     +K  +I+++ ++
Sbjct: 208 QKTLKNKKRRSSTTTEDVQKTIKRWHEEQRKLSKIYEKQKE 248


>Z80224-1|CAB02323.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 93  KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 266
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>Z67755-10|CAA91761.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 93  KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 266
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>Z67754-4|CAA91753.1| 1577|Caenorhabditis elegans Hypothetical
           protein C34E11.3 protein.
          Length = 1577

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 93  KEDSKKLPAVPESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYR 266
           KE+  +L  +  S LK  K + ALR  RLQ   +  SS I    +   +AE  +++YR
Sbjct: 30  KEEISQLRDINHS-LKEEKAQWALRQ-RLQNAEQSESSLINMLEDRLNQAENQIQDYR 85


>AL132862-14|CAB60548.1|  541|Caenorhabditis elegans Hypothetical
           protein Y73F8A.20 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/55 (27%), Positives = 28/55 (50%)
 Frame = +3

Query: 156 EALRTXRLQVTLKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 320
           E +R  R  +T KRR++ I +K+ + ++  +   E + KE+D  R  +      N
Sbjct: 429 ERIRHRRTIITKKRRNTKITRKQRLLRKVRK--SEEKEKEKDRKRAKKALIKNSN 481


>Z81107-9|CAB03234.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +3

Query: 90  GKEDSKK----LPAV--PESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQY 251
           G+EDS+     LP++  P+   K+ K  E  +  +     ++ + A+K+ RE  K  E+Y
Sbjct: 148 GEEDSEMHTGALPSIDTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKY 207

Query: 252 VKE 260
            KE
Sbjct: 208 KKE 210


>Z68335-4|CAA92732.2|  304|Caenorhabditis elegans Hypothetical
           protein R07H5.10 protein.
          Length = 304

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = +3

Query: 90  GKEDSKK----LPAV--PESVLKHRKRREALRTXRLQVTLKRRSSAIKKKREIFKRAEQY 251
           G+EDS+     LP++  P+   K+ K  E  +  +     ++ + A+K+ RE  K  E+Y
Sbjct: 148 GEEDSEMHTGALPSIDTPKKERKYEKVSEDQKDEKYSSKREKNNLAVKRCREKKKNEEKY 207

Query: 252 VKE 260
            KE
Sbjct: 208 KKE 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,344
Number of Sequences: 27780
Number of extensions: 305567
Number of successful extensions: 942
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)