Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2093
         (500 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1...    27   1.2  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    26   2.8  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   6.4  

>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 31  KSDAPLKSVGRNTPVTNTTSKLSTTDIIEDPSRALAGKLIAVYTPPERIT 180
           +SD PL     +T ++N TS      IIE P  A A  L ++  PP+ +T
Sbjct: 177 ESDLPLGLSPADTNISNATS------IIEHPDAANAHTLASLNQPPKHLT 220


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 34  SDAPLKSVGRNTPVTNTTSKLSTTDIIEDPS 126
           SDA  KS  +  P+T+ + KL+T DI   P+
Sbjct: 392 SDAASKSRAKLPPLTSGSLKLNTLDISNTPN 422


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 18  IKNKKVGRSTQKRREKYTRN 77
           + N K G+ST K+RE+ T N
Sbjct: 386 VNNNKPGKSTVKKREEETLN 405


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,623,163
Number of Sequences: 5004
Number of extensions: 25185
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)