Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2093
         (500 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0441 - 14037497-14038006,14038208-14038369                       28   3.7  
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600...    28   3.7  
11_02_0068 + 7991816-7992603,7995209-7997177                           27   6.4  
11_02_0096 - 8261667-8262083                                           27   8.5  

>05_03_0441 - 14037497-14038006,14038208-14038369
          Length = 223

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 164 PPRG*RPARCSSGARCSPWRCXGG 235
           PPRG R  RC++G   +   C GG
Sbjct: 130 PPRGSRSCRCATGGSAAEAVCSGG 153


>04_04_0076 +
           22558105-22558261,22558356-22558405,22559837-22560044,
           22560112-22560237,22560469-22560567,22560729-22561405,
           22561483-22561731,22561808-22561936,22562021-22562089,
           22562183-22562256,22563086-22563098,22563361-22563468,
           22563541-22563651,22563725-22563811,22564043-22564068,
           22564840-22564906,22565123-22565212,22565295-22565387,
           22565515-22565604,22565699-22565761,22566349-22566447
          Length = 894

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 6   IRLLIKNKKVGRSTQKRREKYTRNEHNLQTVYN*YNRRSVSCS 134
           ++ +++ ++   S+ KRR+ Y R EH LQ V     R+ V+ S
Sbjct: 743 LKHILQIQEYSVSSIKRRDPYIRKEHQLQLVSPETKRKDVNLS 785


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
 Frame = +1

Query: 1   NSSVCLLKIKKSDAPLKSVGRNTP----VTNTTSKLSTTDIIEDPSRALAGKL 147
           N   C +K K   A   SV +N      +TN  S+++TT  +ED  +A+  KL
Sbjct: 203 NQIYCKIKGKFECAAFASVFQNPNTKKVLTNILSQVATTAAVEDDEQAIINKL 255


>11_02_0096 - 8261667-8262083
          Length = 138

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/58 (32%), Positives = 21/58 (36%)
 Frame = +2

Query: 161 RPPRG*RPARCSSGARCSPWRCXGGPXT*RPPKRHSRPGGXPCGXXXMXRCPTGSASS 334
           R P G RP    SGA     R      T   P+R   PGG   G     R P    +S
Sbjct: 18  RGPGGRRPRPVESGASSGATRRRESSDTGLGPRRGRPPGGCVDGSLGQRRSPAIEVTS 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,131,263
Number of Sequences: 37544
Number of extensions: 215150
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)