Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2092
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac... 109 3e-25
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 56 5e-09
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 39 7e-04
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 37 0.003
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 36 0.006
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 31 0.18
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 31 0.18
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase... 28 1.6
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 28 1.6
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 27 2.2
SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase Ubp1|Schizos... 27 2.9
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 5.0
SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase Ubp6|Schizosacc... 25 8.7
>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 585
Score = 109 bits (263), Expect = 3e-25
Identities = 44/81 (54%), Positives = 60/81 (74%)
Frame = +3
Query: 435 PTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCND 614
P WVH +F+GTLTSET+CL CE ++S+DE F DL +D+ +TS+T CL+ FS +E L +
Sbjct: 227 PKWVHSLFEGTLTSETKCLTCENITSRDESFLDLSIDIENHTSVTSCLRSFSASEMLSSK 286
Query: 615 NKFKCDNCSSYXEAXKRMRVE 677
NKF CD C S EA KRM+++
Sbjct: 287 NKFHCDVCKSLQEAEKRMKIK 307
Score = 33.9 bits (74), Expect = 0.025
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINEII 340
F + QQDAHEF NFL+N + E +
Sbjct: 191 FRSTQQQDAHEFFNFLLNSVTETL 214
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 56.0 bits (129), Expect = 5e-09
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +3
Query: 432 EPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCN 611
E + VH IF G L + C C+ S+ + DL VD + +S+ LK F E L
Sbjct: 243 ETSVVHRIFGGYLRQQILCSVCKKPSNTYQALLDLSVDA-KGSSLADSLKHFVHAEKLTK 301
Query: 612 DNKFKCDNCSSYXEAXKRMRV 674
NK++C+NC +A K+M +
Sbjct: 302 QNKYRCENCKQLVDASKQMTI 322
Score = 28.3 bits (60), Expect = 1.2
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +2
Query: 239 RTLFRISQ*EFDNYMQQDAHEFLNFLIN 322
+++ ++ F Y Q+DAHEF+ +L++
Sbjct: 197 QSMLKVISSHFRPYRQEDAHEFMRYLVD 224
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 39.1 bits (87), Expect = 7e-04
Identities = 18/60 (30%), Positives = 34/60 (56%)
Frame = +3
Query: 444 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 623
+++IF G + S +C++ SS+ E F+D+Q++V ++ + ETL DNK+
Sbjct: 336 LNDIFVGKMKSYVKCIDVNYESSRVEDFWDIQLNVKGMDTLEDSFRDAIQVETLTGDNKY 395
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 37.1 bits (82), Expect = 0.003
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +3
Query: 444 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKF 623
+H IF G+L + CL+C+ + D+ +D+ + T + CL+ F E + ++
Sbjct: 261 IHRIFSGSLKNVVTCLDCKKERVAVDPLMDISLDINEPT-LQGCLERFVSKEKV----QY 315
Query: 624 KCDNCSS 644
C +C S
Sbjct: 316 SCHSCGS 322
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 35.9 bits (79), Expect = 0.006
Identities = 19/70 (27%), Positives = 35/70 (50%)
Frame = +3
Query: 453 IFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCD 632
+F G + S C+N S++ E ++D+Q++V ++ + + ETL DN + D
Sbjct: 322 LFVGKMKSYIACVNVNFESARSEDYWDIQLNVKGMKNLEDSFRSYIQVETLEGDNCYFAD 381
Query: 633 NCSSYXEAXK 662
+ EA K
Sbjct: 382 T-YGFQEAKK 390
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = +2
Query: 284 QQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGENV 400
Q+DA EFLN ++ ++E + ER LK + N ++
Sbjct: 226 QEDAEEFLNLFLDELHEEFVRERRHYLLKNDERNPKSDI 264
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 31.1 bits (67), Expect = 0.18
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 561 SITHCLKCFSDTETLCNDNKFKCDNC 638
++ CLK F+ E L +N F C+NC
Sbjct: 675 TLIDCLKNFTHVEELSGENMFACENC 700
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 248 FRISQ*EFDNYMQQDAHEFLNFLINHI 328
FR +F +QQDAHE L L++ +
Sbjct: 289 FRRLHPQFSESVQQDAHELLRLLLDDL 315
>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
desaturase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 362
Score = 27.9 bits (59), Expect = 1.6
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 421 GTEPITRHILTGVVLLNF*CALI 353
G EP+T+ I+ GVV L F CA +
Sbjct: 57 GYEPLTKWIVLGVVSLQFTCAYL 79
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -3
Query: 142 DICNSVLTTYQTNTRFSPPNEGV*NFSTVISRNIIN 35
+I N VL+ Y+T PPN G + I+RN+I+
Sbjct: 590 NIQNHVLSCYKTLFFEPPPNSGTNEAANYIARNLIS 625
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINEIILAE 349
EF QQDA+EFL +L+ I + +A+
Sbjct: 400 EFGTSQQQDAYEFLLYLLGKIRKSSIAK 427
>SPCC16A11.12c |ubp1||ubiquitin C-terminal hydrolase
Ubp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 849
Score = 27.1 bits (57), Expect = 2.9
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +3
Query: 552 QNTSITHCLKCFSDTETLCNDNKFKCDNCSSYXEAXKRMRV 674
++ ++ CL FS E L + + C C ++ A KR+ +
Sbjct: 688 ESITLEDCLLEFSKPEQLDLQDSWYCPGCKAFRPATKRLEI 728
Score = 26.2 bits (55), Expect = 5.0
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINE 334
F Y QQD+ EF+ F ++ ++E
Sbjct: 364 FSGYRQQDSQEFIAFFLDGLHE 385
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINE 334
F Y QQD+ EFL FL++ ++E
Sbjct: 395 FLGYGQQDSQEFLAFLLDGLHE 416
>SPAC6G9.08 |ubp6||ubiquitin C-terminal hydrolase
Ubp6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.4 bits (53), Expect = 8.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE 394
E Y QQDA E +FL++ + +R+ S+ VQKN +G+
Sbjct: 176 ETGGYAQQDAEECWSFLLS------VLQRSLSSEWVQKNMAGK 212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,784,322
Number of Sequences: 5004
Number of extensions: 54414
Number of successful extensions: 152
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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