Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2092
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical p... 132 3e-31
Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical p... 132 3e-31
Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical pr... 48 9e-06
AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical ... 46 2e-05
Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical pr... 42 4e-04
Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical pr... 42 4e-04
AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical ... 34 0.12
Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical pr... 33 0.22
Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical pr... 33 0.29
AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical... 31 1.2
Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical pr... 30 2.0
AB095019-1|BAC22611.1| 822|Caenorhabditis elegans ubiquitin-spe... 30 2.0
U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical pr... 29 2.7
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def... 28 6.2
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def... 28 6.2
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t... 28 6.2
AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical ... 28 8.1
>Z29095-12|CAB54287.2| 414|Caenorhabditis elegans Hypothetical
protein R10E11.3b protein.
Length = 414
Score = 132 bits (319), Expect = 3e-31
Identities = 56/80 (70%), Positives = 67/80 (83%)
Frame = +3
Query: 438 TWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDN 617
TW+HEIFQG LT+ETRCL+CETVSSKDE F DL +DV QNTSI+HCL+ FS+TETLC D
Sbjct: 183 TWIHEIFQGILTNETRCLSCETVSSKDEDFLDLSIDVEQNTSISHCLRVFSETETLCGDQ 242
Query: 618 KFKCDNCSSYXEAXKRMRVE 677
K+ C+ CSS EA KRMR++
Sbjct: 243 KYFCETCSSKQEAQKRMRIK 262
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE--NVTCN 409
FDNYMQQDAHEF N+LIN I+E ++ E+ K ++ + + NVT N
Sbjct: 97 FDNYMQQDAHEFFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVN 145
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Frame = +3
Query: 180 MGAN-ISQLERDIGSEQFP--PNEHYFGLVN 263
MGA SQLE++I + + NEHY+GLVN
Sbjct: 1 MGATGSSQLEKEISTTESVNNANEHYYGLVN 31
>Z29095-11|CAB54286.2| 426|Caenorhabditis elegans Hypothetical
protein R10E11.3a protein.
Length = 426
Score = 132 bits (319), Expect = 3e-31
Identities = 56/80 (70%), Positives = 67/80 (83%)
Frame = +3
Query: 438 TWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDN 617
TW+HEIFQG LT+ETRCL+CETVSSKDE F DL +DV QNTSI+HCL+ FS+TETLC D
Sbjct: 195 TWIHEIFQGILTNETRCLSCETVSSKDEDFLDLSIDVEQNTSISHCLRVFSETETLCGDQ 254
Query: 618 KFKCDNCSSYXEAXKRMRVE 677
K+ C+ CSS EA KRMR++
Sbjct: 255 KYFCETCSSKQEAQKRMRIK 274
Score = 50.0 bits (114), Expect = 2e-06
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINEIILAERNQSTLKVQKNNSGE--NVTCN 409
FDNYMQQDAHEF N+LIN I+E ++ E+ K ++ + + NVT N
Sbjct: 109 FDNYMQQDAHEFFNYLINTISETLIQEKIAEREKASRHGTLKKGNVTVN 157
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Frame = +3
Query: 180 MGAN-ISQLERDIGSEQFP--PNEHYFGLVNRNLTITCNKM 293
MGA SQLE++I + + NEHY+GLVN T CN +
Sbjct: 1 MGATGSSQLEKEISTTESVNNANEHYYGLVNFGNTCYCNSV 41
>Z47812-1|CAA87795.2| 1326|Caenorhabditis elegans Hypothetical
protein T05H10.1 protein.
Length = 1326
Score = 47.6 bits (108), Expect = 9e-06
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 6/83 (7%)
Frame = +3
Query: 444 VHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQ------NTSITHCLKCFSDTETL 605
+ ++++GT+ CL C S K ++F DL + V S+ L F E L
Sbjct: 204 IQDLYRGTMEDFVACLKCGRESVKTDYFLDLPLAVKPFGAIHAYKSVEEALTAFVQPELL 263
Query: 606 CNDNKFKCDNCSSYXEAXKRMRV 674
N++ C+NC S +A K +R+
Sbjct: 264 DGSNQYMCENCKSKQDAHKGLRI 286
>AL132902-8|CAC14423.2| 699|Caenorhabditis elegans Hypothetical
protein Y71A12B.9 protein.
Length = 699
Score = 46.4 bits (105), Expect = 2e-05
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Frame = +3
Query: 384 TPVRM*RVMGSVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDV--GQN 557
T +R R + +P + T + + F+GTL S C C S+K + F DL +D+ +N
Sbjct: 488 TEMRKCRKLPGMPDDKH-TPISKYFEGTLQSSVICQTCRNCSNKIDEFMDLSLDIPAQRN 546
Query: 558 TS---ITHCLKCFSDTETLCNDNKFKCDNCSSYXEAXKRM 668
S ++ CL F E L K +C C + K+M
Sbjct: 547 ASKVRLSDCLSTFFKLEMLEKGEKPECAKCKTKQTCSKQM 586
>Z92835-4|CAE54910.1| 1135|Caenorhabditis elegans Hypothetical
protein H19N07.2c protein.
Length = 1135
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/65 (27%), Positives = 39/65 (60%)
Frame = +3
Query: 429 TEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLC 608
+E + +F+G + S +CL+ + SS+ E F+D+Q++V S+ + ++ +E L
Sbjct: 294 SEEKSIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSLERAFEAYTTSEILD 353
Query: 609 NDNKF 623
++NK+
Sbjct: 354 DENKY 358
>Z92835-3|CAB07397.1| 1130|Caenorhabditis elegans Hypothetical
protein H19N07.2b protein.
Length = 1130
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/65 (27%), Positives = 39/65 (60%)
Frame = +3
Query: 429 TEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLC 608
+E + +F+G + S +CL+ + SS+ E F+D+Q++V S+ + ++ +E L
Sbjct: 294 SEEKSIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSLERAFEAYTTSEILD 353
Query: 609 NDNKF 623
++NK+
Sbjct: 354 DENKY 358
>Z92835-2|CAB07396.1| 1133|Caenorhabditis elegans Hypothetical
protein H19N07.2a protein.
Length = 1133
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/65 (27%), Positives = 39/65 (60%)
Frame = +3
Query: 429 TEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLC 608
+E + +F+G + S +CL+ + SS+ E F+D+Q++V S+ + ++ +E L
Sbjct: 294 SEEKSIPNLFRGNMKSYIKCLDVDYESSRTESFYDVQLNVLGMDSLERAFEAYTTSEILD 353
Query: 609 NDNKF 623
++NK+
Sbjct: 354 DENKY 358
>AL132898-1|CAC14405.1| 357|Caenorhabditis elegans Hypothetical
protein Y59A8B.2 protein.
Length = 357
Score = 33.9 bits (74), Expect = 0.12
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +3
Query: 462 GTLT-SETRCLNCETVSSKDEHFFDLQVDVGQNT--SITHCLKCFSDTETLCNDNKFKCD 632
G++T SE RCL C S+ E + V++ N+ S+ CL+ L D+++ C
Sbjct: 174 GSITVSEIRCLTCGASSATFEENTIISVEIPSNSSCSLDMCLRSHFSQTKLDGDSRWNCP 233
Query: 633 NC 638
C
Sbjct: 234 KC 235
>Z66511-5|CAA91317.1| 1095|Caenorhabditis elegans Hypothetical
protein F07A11.4 protein.
Length = 1095
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/23 (52%), Positives = 19/23 (82%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINE 334
+F N+ Q DAHEFL+FL++ ++E
Sbjct: 506 QFANFAQHDAHEFLSFLLDGLHE 528
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 450 EIFQGTLTSETRCLNCETVSSKDEHFFDLQVDVGQNTSIT 569
++F G L S +C NC+ VS + F L V +N T
Sbjct: 570 DLFHGQLKSHVQCPNCDRVSITFDPFVYLPVPFPKNKQST 609
>Z79601-1|CAB01885.2| 716|Caenorhabditis elegans Hypothetical
protein K09A9.4 protein.
Length = 716
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 414 SVPHNTEPTWVHEIFQGTLTSETRCLNCETVSSKDEHFFDLQVD-VGQN 557
+ PH T + IFQG L ++ +C +C S E+F DL + VG+N
Sbjct: 315 NAPHTK--TAISAIFQGVLENQIQCHSCGFRSRTIENFLDLSIPIVGEN 361
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/64 (28%), Positives = 26/64 (40%)
Frame = +3
Query: 471 TSETRCLNCETVSSKDEHFFDLQVDVGQNTSITHCLKCFSDTETLCNDNKFKCDNCSSYX 650
T + C + +D F Q TS+ CL F TL +DN++ C C
Sbjct: 374 TPKAPCTSSNIEDGQDPGFLVHQ-GAFNKTSLESCLDRFFQNSTLQDDNQYSCSKCEVLV 432
Query: 651 EAXK 662
+A K
Sbjct: 433 DATK 436
>AL032631-11|CAB63341.1| 975|Caenorhabditis elegans Hypothetical
protein Y106G6H.12 protein.
Length = 975
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINEII 340
EFDN Q+DAHE+L L++ +++I+
Sbjct: 381 EFDNNDQKDAHEYLTELLSCVDDIM 405
>Z74033-4|CAA98471.2| 822|Caenorhabditis elegans Hypothetical
protein F38B7.5 protein.
Length = 822
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINEII-LAERNQSTL 367
EF+N QQDAHEFL LI +++ + + +N T+
Sbjct: 317 EFNNDDQQDAHEFLLTLIGAVDDAMGVMSKNVKTI 351
>AB095019-1|BAC22611.1| 822|Caenorhabditis elegans
ubiquitin-specific protease protein.
Length = 822
Score = 29.9 bits (64), Expect = 2.0
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 266 EFDNYMQQDAHEFLNFLINHINEII-LAERNQSTL 367
EF+N QQDAHEFL LI +++ + + +N T+
Sbjct: 317 EFNNDDQQDAHEFLLTLIGAVDDAMGVMSKNVKTI 351
>U97012-5|AAK39149.1| 515|Caenorhabditis elegans Hypothetical
protein C04E6.5 protein.
Length = 515
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 233 T*RTLFRISQ*EFDNYMQQDAHEFLNFLINHINEI 337
T R L + + +F N QQDAHEFL L I+++
Sbjct: 234 TFRELIGMIRNDFANKNQQDAHEFLLMLFEAIDDV 268
>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
protein 3, isoforma protein.
Length = 1175
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 558 TSITHCLKCFSDTETLCNDNKFKCDNCSSYXEAXKRMRV 674
+S+ HC++ FS ETL D +CD C K M +
Sbjct: 1028 SSLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTI 1064
>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
protein 3, isoformb protein.
Length = 1178
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 558 TSITHCLKCFSDTETLCNDNKFKCDNCSSYXEAXKRMRV 674
+S+ HC++ FS ETL D +CD C K M +
Sbjct: 1031 SSLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTI 1067
>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
c-terminal hydrolase protein.
Length = 1175
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 558 TSITHCLKCFSDTETLCNDNKFKCDNCSSYXEAXKRMRV 674
+S+ HC++ FS ETL D +CD C K M +
Sbjct: 1028 SSLEHCIEKFSCPETL--DAAIQCDRCEKKTMRDKVMTI 1064
>AF100662-1|AAC68977.1| 900|Caenorhabditis elegans Hypothetical
protein H34C03.2 protein.
Length = 900
Score = 27.9 bits (59), Expect = 8.1
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +2
Query: 269 FDNYMQQDAHEFLNFLINHINE 334
F+ Y QQDAHE + ++++ ++E
Sbjct: 359 FNGYSQQDAHELMAYVLDGLHE 380
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,543,123
Number of Sequences: 27780
Number of extensions: 307469
Number of successful extensions: 720
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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