Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2090
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 177 1e-45
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 177 1e-45
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 177 1e-45
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 110 2e-25
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 3e-22
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 75 9e-15
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 42 8e-05
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 40 4e-04
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 35 0.012
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 35 0.012
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.11
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.19
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch... 29 0.58
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 28 1.3
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 2.3
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c... 25 7.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 25 9.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 25 9.5
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 9.5
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 177 bits (431), Expect = 1e-45
Identities = 91/143 (63%), Positives = 101/143 (70%)
Frame = +2
Query: 182 QMGKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTX 361
++GKGSFKYAWVLDKLKA+R RGITIDIALW ET KY VT+IDAPGHRDFI NMITGT
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Query: 362 HADXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEPPYXXPRF 541
AD A LI+ GTGEFEAGIS +GQTREHALLA TLGVKQL K T + RF
Sbjct: 108 QADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARF 165
Query: 542 EEITQGSILIXQKHWLXPNCXRF 610
EEI + + +K P F
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPF 188
Score = 83.8 bits (198), Expect = 2e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +3
Query: 39 MGKEXTHINIVVIGHVDSGKSTTTGHLIYKXGGIDKRTIXKFE 167
MGKE HIN+VVIGHVDSGKSTTTGHLIYK GGIDKRTI KFE
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFE 43
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 555 KEVSSYXKNIGYXPTAXAXXPLAGWHGDNMXE 650
KE S++ K +G+ P P++G+ GDNM E
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 177 bits (431), Expect = 1e-45
Identities = 91/143 (63%), Positives = 101/143 (70%)
Frame = +2
Query: 182 QMGKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTX 361
++GKGSFKYAWVLDKLKA+R RGITIDIALW ET KY VT+IDAPGHRDFI NMITGT
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Query: 362 HADXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEPPYXXPRF 541
AD A LI+ GTGEFEAGIS +GQTREHALLA TLGVKQL K T + RF
Sbjct: 108 QADCAVLIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARF 165
Query: 542 EEITQGSILIXQKHWLXPNCXRF 610
EEI + + +K P F
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPF 188
Score = 83.8 bits (198), Expect = 2e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +3
Query: 39 MGKEXTHINIVVIGHVDSGKSTTTGHLIYKXGGIDKRTIXKFE 167
MGKE HIN+VVIGHVDSGKSTTTGHLIYK GGIDKRTI KFE
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFE 43
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 555 KEVSSYXKNIGYXPTAXAXXPLAGWHGDNMXE 650
KE S++ K +G+ P P++G+ GDNM E
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 177 bits (431), Expect = 1e-45
Identities = 91/143 (63%), Positives = 101/143 (70%)
Frame = +2
Query: 182 QMGKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTX 361
++GKGSFKYAWVLDKLKA+R RGITIDIALW ET KY VT+IDAPGHRDFI NMITGT
Sbjct: 48 ELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTS 107
Query: 362 HADXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEPPYXXPRF 541
AD A LI+ GTGEFEAGIS +GQTREHALLA TLGVKQL K T + RF
Sbjct: 108 QADCAILIIGGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARF 165
Query: 542 EEITQGSILIXQKHWLXPNCXRF 610
EEI + + +K P F
Sbjct: 166 EEIVKETSNFIKKVGFNPKTVPF 188
Score = 83.8 bits (198), Expect = 2e-17
Identities = 38/43 (88%), Positives = 39/43 (90%)
Frame = +3
Query: 39 MGKEXTHINIVVIGHVDSGKSTTTGHLIYKXGGIDKRTIXKFE 167
MGKE HIN+VVIGHVDSGKSTTTGHLIYK GGIDKRTI KFE
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFE 43
Score = 35.5 bits (78), Expect = 0.007
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 555 KEVSSYXKNIGYXPTAXAXXPLAGWHGDNMXE 650
KE S++ K +G+ P P++G+ GDNM E
Sbjct: 170 KETSNFIKKVGFNPKTVPFVPVSGFQGDNMIE 201
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 110 bits (264), Expect = 2e-25
Identities = 55/121 (45%), Positives = 70/121 (57%)
Frame = +2
Query: 188 GKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTXHA 367
GKGSF YAW+LD + +R RG+T+D+A E++K I DAPGHRDFI MI G A
Sbjct: 220 GKGSFSYAWLLDTTEEERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSA 279
Query: 368 DXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEPPYXXPRFEE 547
D A L+V + FE G NGQTREHA L LG+ ++ K + RF+E
Sbjct: 280 DFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQE 337
Query: 548 I 550
I
Sbjct: 338 I 338
Score = 40.7 bits (91), Expect = 2e-04
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = +3
Query: 60 INIVVIGHVDSGKSTTTGHLIYKXGGIDKRTIXK 161
+++VV GHVDSGKST G ++++ G I+ R++ K
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQK 211
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 99 bits (238), Expect = 3e-22
Identities = 46/126 (36%), Positives = 68/126 (53%)
Frame = +2
Query: 170 RRPRQMGKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMI 349
R ++ GK S+ +W LD +R +G T+++ ET +++DAPGH+ ++ NMI
Sbjct: 275 REAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMI 334
Query: 350 TGTXHADXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEPPYX 529
G AD L++ A GEFEAG GQTREHA+LA T G+ L K +
Sbjct: 335 NGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS 394
Query: 530 XPRFEE 547
R++E
Sbjct: 395 EERYKE 400
Score = 52.8 bits (121), Expect = 4e-08
Identities = 24/42 (57%), Positives = 32/42 (76%)
Frame = +3
Query: 42 GKEXTHINIVVIGHVDSGKSTTTGHLIYKXGGIDKRTIXKFE 167
GKE H+NIV IGHVD+GKST G++++ G +DKRT+ K E
Sbjct: 235 GKE--HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIE 274
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 74.9 bits (176), Expect = 9e-15
Identities = 44/112 (39%), Positives = 57/112 (50%)
Frame = +2
Query: 185 MGKGSFKYAWVLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTXH 364
+G+ SF +DK ++ RGITI A ET + +D PGH D+I NMITG
Sbjct: 80 LGQASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAAT 139
Query: 365 ADXAXLIVPAGTGEFEAGISXNGQTREHALLAXTLGVKQLXXXAXKXXXTEP 520
D A ++V A G+ QTREH LLA +GVKQ+ K EP
Sbjct: 140 MDGAIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEP 184
Score = 31.1 bits (67), Expect = 0.14
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 45 KEXTHINIVVIGHVDSGKSTTT 110
++ H+NI IGHVD GK+T T
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLT 70
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 41.9 bits (94), Expect = 8e-05
Identities = 22/63 (34%), Positives = 29/63 (46%)
Frame = +2
Query: 215 VLDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTXHADXAXLIVPA 394
V+D L A+R RGITI+ A + +ID PGH DF + D A I+
Sbjct: 67 VMDYLPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAIIDG 126
Query: 395 GTG 403
G
Sbjct: 127 SAG 129
Score = 29.5 bits (63), Expect = 0.44
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 63 NIVVIGHVDSGKSTTTGHLIYKXG 134
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 39.5 bits (88), Expect = 4e-04
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +2
Query: 218 LDKLKADRXRGITIDIA----LWXXETNKYYVTIIDAPGHRDFIXNMITGTXHADXAXLI 385
LDKL+ +R RGIT+ ++ Y + +ID PGH DF ++ + L+
Sbjct: 95 LDKLEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILL 154
Query: 386 VPAGTG 403
V A G
Sbjct: 155 VDASQG 160
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 39 MGKEXTHINIVVIGHVDSGKSTTTGHLIYKXG 134
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIXNMITGTXHADXAXLIV 388
+ V +ID+PGH DF + D A ++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/32 (53%), Positives = 19/32 (59%)
Frame = +3
Query: 39 MGKEXTHINIVVIGHVDSGKSTTTGHLIYKXG 134
MGK N+ VI HVD GKST T L+ K G
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIXNMITGTXHADXAXLIV 388
+ V +ID+PGH DF + D A ++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.5 bits (68), Expect = 0.11
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIXNMITGTXHADXAXLIVPAGTGEFEAGISXNGQTREH 448
Y + IID PGH DF + D A L++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.58
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 63 NIVVIGHVDSGKSTTTGHLIYKXGGI 140
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 293 YYVTIIDAPGHRDFIXNMITGTXHADXAXLIVPAGTG 403
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 29.1 bits (62), Expect = 0.58
Identities = 11/20 (55%), Positives = 17/20 (85%)
Frame = -3
Query: 570 MRILPCVISSNLGSLYGGSV 511
+R++P +I S+LGSL GG+V
Sbjct: 389 IRLIPMIIGSSLGSLLGGAV 408
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +2
Query: 188 GKGSFKYAWVLDKLKADRXRGITIDIALWXXETNK--YYVTIIDAPGHRDFIXNMITGTX 361
GK + A+ + + GIT I + +K ++T +D PGH F G
Sbjct: 183 GKTTLLDAFRKSTIASTEHGGITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGAN 242
Query: 362 HADXAXLIVPAGTG 403
AD L+V G
Sbjct: 243 IADIVVLVVAGDDG 256
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 27.1 bits (57), Expect = 2.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 296 YVTIIDAPGHRDFIXNMITGTXHADXAXLIV 388
+V+ +D PGH + M+ G D A L++
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLI 139
>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 581
Score = 25.4 bits (53), Expect = 7.2
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = -3
Query: 561 LPCVISSNLGSLYGG 517
+PC+I + +G +YGG
Sbjct: 388 VPCIIGATIGCIYGG 402
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/57 (21%), Positives = 25/57 (43%)
Frame = +2
Query: 218 LDKLKADRXRGITIDIALWXXETNKYYVTIIDAPGHRDFIXNMITGTXHADXAXLIV 388
L++ + + + +A+ + + ID PGH DF+ + +D L+V
Sbjct: 184 LERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 9.5
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +2
Query: 221 DKLKADRX-RGITIDIALWXXETNKYYV--TIIDAPGHRDFIXN 343
+K++A + + I+I E +++ T+ID PG DFI N
Sbjct: 60 EKVRAKHAEKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +2
Query: 305 IIDAPGHRDFIXNMITGTXHADXAXLIV 388
IID PGH F GT + A L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -2
Query: 571 YEDTSLCDFLKSGXXVWWF 515
YE S+C F VWWF
Sbjct: 2017 YEIYSVCAFFIGASFVWWF 2035
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,143
Number of Sequences: 5004
Number of extensions: 34071
Number of successful extensions: 124
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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