Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2089
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...   173   2e-44
SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces ...   126   4e-30
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.6  
SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.6  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    26   6.0  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    26   6.0  

>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score =  173 bits (421), Expect = 2e-44
 Identities = 84/170 (49%), Positives = 111/170 (65%)
 Frame = +1

Query: 190 WNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSRGL 369
           W +V MGPPD I GITEAYKKD   KK+NLG G YRDD GKP+VLPSVR+AE  L S+ L
Sbjct: 40  WADVPMGPPDPIFGITEAYKKDGDVKKMNLGAGTYRDDAGKPYVLPSVRQAETELLSQKL 99

Query: 370 NHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAKA 549
           + EYAPI+G  ++     KLA+G+    IK+R   + Q++SGTGAL +   F+   Y  +
Sbjct: 100 DKEYAPITGIPSFRVQATKLAYGDVYESIKDRL-VSAQSISGTGALCIAANFLASFY-PS 157

Query: 550 KEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLXGALEDISKIP 699
           K I++  PTWGNH  + +   L  K Y+Y+DP T G D+ G L D++  P
Sbjct: 158 KTIYVSDPTWGNHKNVFSRAGLTVKSYKYYDPATRGLDIKGMLSDLTSAP 207


>SPAC10F6.13c |||aspartate aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 409

 Score =  126 bits (303), Expect = 4e-30
 Identities = 63/171 (36%), Positives = 92/171 (53%), Gaps = 3/171 (1%)
 Frame = +1

Query: 196 NVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILHSR-GLN 372
           N++    D I  +   Y +D  PKKVN+ VGAYRDD GKP++LP+V+KA +I+  +   N
Sbjct: 8   NIEEAKADAIFKLNAQYHQDEDPKKVNMSVGAYRDDTGKPWILPAVKKASKIVEEQASFN 67

Query: 373 HEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFITKHYAK-- 546
           HEY PI+G   +T A A++ F  +  ++      ++Q++SGTGA  L   FI   Y K  
Sbjct: 68  HEYLPIAGLPRFTKAAAEVLFRPNPHLLSEDRVASMQSVSGTGANFLAASFIETFYVKHT 127

Query: 547 AKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLXGALEDISKIP 699
              +++  PTW  H  +   L +    Y Y+D K   FD  G L  I   P
Sbjct: 128 GAHVYISNPTWPVHRTLWEKLGVTVDTYPYWDAKNRSFDYEGMLSTIKSAP 178


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -2

Query: 636 VTVFLVRQVEGVADLRVVSPSRRREPDLLCLSVVFRYEL 520
           +T  L++ + G+   RV S   RR P +LC S++  + L
Sbjct: 80  LTGILIQPIAGILSDRVNSRIGRRRPFMLCASLLGTFSL 118


>SPBC21B10.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 159

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 369 ESSTVKNFFCLSDRRQNKWFSLIVSICSNP 280
           ESST   ++ L+    NKWF +     +NP
Sbjct: 113 ESSTKTVYYVLAHLNDNKWFGVATQKTNNP 142


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 348 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 241
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 224 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 257


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -2

Query: 348 FFCLSDRRQNKWFSLIVSICSNPKIYFFRMCVLLVC 241
           F C+ D R N   +LI S CS     FF   +LLVC
Sbjct: 214 FGCVKDGRLNLNKALICSTCSISAALFF--ILLLVC 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,002,998
Number of Sequences: 5004
Number of extensions: 64423
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)