Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-2089
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0786 - 31992357-31992441,31992632-31992752,31993371-319934... 179 2e-45
06_03_0398 - 20379748-20379820,20379930-20380024,20380127-203802... 158 5e-39
02_02_0198 + 7705868-7706065,7706955-7707052,7707269-7707374,770... 65 4e-11
07_01_0524 + 3892340-3894625,3894995-3895109,3895204-3895298,389... 29 3.5
01_06_1021 - 33883594-33884583 29 3.5
01_06_0332 + 28522797-28523536,28525035-28525067,28525956-285269... 29 3.5
01_06_0324 - 28485196-28486098 29 3.5
03_02_0195 - 6325907-6326173,6326996-6327149,6327245-6327336,632... 29 4.7
10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,338... 28 6.2
06_02_0148 - 12280794-12280962,12281102-12281210,12281283-122813... 28 6.2
02_05_0895 - 32593155-32593190,32594228-32594279,32594544-325945... 28 6.2
>01_06_0786 -
31992357-31992441,31992632-31992752,31993371-31993465,
31993595-31993716,31994217-31994354,31994564-31994727,
31994835-31994955,31995049-31995148,31995329-31995412,
31996082-31996143,31996246-31996317,31996447-31996506
Length = 407
Score = 179 bits (436), Expect = 2e-45
Identities = 88/176 (50%), Positives = 114/176 (64%), Gaps = 1/176 (0%)
Frame = +1
Query: 175 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEIL 354
ASS+ + + P D ILG+T AY KD P KVNLGVGAYR +EGKP VL VR+AE++L
Sbjct: 2 ASSSVFAGLAQAPEDPILGVTVAYNKDPSPVKVNLGVGAYRTEEGKPLVLNVVRRAEQML 61
Query: 355 -HSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALRLGLEFIT 531
++ EY PI+G A + AKL FG DSP I+ TVQ LSGTG+LR+G EF+
Sbjct: 62 INNPSRVKEYLPITGLADFNKLSAKLIFGADSPAIQENRVATVQCLSGTGSLRVGGEFLA 121
Query: 532 KHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLXGALEDISKIP 699
+HY + + I++P PTWGNHP++ L + YRY+DP T G D G LED+ P
Sbjct: 122 RHYHE-RTIYIPQPTWGNHPKVFTLAGLTVRSYRYYDPATRGLDFQGLLEDLGSAP 176
>06_03_0398 -
20379748-20379820,20379930-20380024,20380127-20380222,
20380342-20380501,20380844-20381016,20381102-20381206,
20381460-20381565,20381741-20381947,20383478-20383563,
20383655-20383846
Length = 430
Score = 158 bits (383), Expect = 5e-39
Identities = 75/183 (40%), Positives = 108/183 (59%)
Frame = +1
Query: 151 IVGCTGLXASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPS 330
++G + ++W+ +V+ D ILG+TEA+ D P KVN+GVGAYRDD GKP VL
Sbjct: 20 LMGAVAARSMASWFGHVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDSGKPVVLEC 79
Query: 331 VRKAEEILHSRGLNHEYAPISGEATYTDAVAKLAFGEDSPVIKNRSNCTVQTLSGTGALR 510
VR+AE + + +N EY P+ G + KLA+GE+ IK++ VQ LSGTGA R
Sbjct: 80 VREAERRI-AGSMNMEYLPMGGSIKMIEESLKLAYGENCEFIKDKRIAAVQALSGTGACR 138
Query: 511 LGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDLXGALEDIS 690
L +F K + +I++PTPTW NH I +P K + Y+ P++ G D G ++DI
Sbjct: 139 LFADF-QKRFLPDSQIYIPTPTWANHHNIWRDAQVPQKTFTYYHPESRGLDFAGLMDDIK 197
Query: 691 KIP 699
P
Sbjct: 198 NAP 200
>02_02_0198 +
7705868-7706065,7706955-7707052,7707269-7707374,
7707636-7707740,7707823-7707995,7708435-7708594,
7708683-7708778,7709349-7709417,7709434-7709528,
7709615-7709687
Length = 390
Score = 65.3 bits (152), Expect = 4e-11
Identities = 27/71 (38%), Positives = 41/71 (57%)
Frame = +1
Query: 487 LSGTGALRLGLEFITKHYAKAKEIWLPTPTWGNHPQICNTLNLPHKKYRYFDPKTNGFDL 666
LSGTGA RL +F + + +I++PTPTW NH I +P + + Y+ P++ G D
Sbjct: 68 LSGTGACRLFADF-QRRFLPNSQIYIPTPTWSNHHNIWRDAQVPQRTFTYYHPESRGLDF 126
Query: 667 XGALEDISKIP 699
G ++DI P
Sbjct: 127 AGLMDDIKNAP 137
Score = 35.5 bits (78), Expect = 0.041
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +1
Query: 175 ASSTWWNNVQMGPPDVILGITEAYKKDTHPKKVNLGV 285
A ++ + +V+ D ILG+TEA+ D P KVN+GV
Sbjct: 30 AMASLFGHVEPASKDPILGVTEAFLADPSPDKVNVGV 66
>07_01_0524 +
3892340-3894625,3894995-3895109,3895204-3895298,
3895929-3896167,3896524-3896610,3896967-3897066,
3897908-3898115,3898224-3899422
Length = 1442
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 277 DLLF*DVCPSCMLL*CLRLHLADPSEHCSTRCC 179
DLL D CPS L CL + + HCS+ C
Sbjct: 743 DLLCCDNCPSTFHLACLGIKMPSGDWHCSSCIC 775
>01_06_1021 - 33883594-33884583
Length = 329
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = -3
Query: 470 LLLFLMTGLSSPKASLATASVYVASP--LMGAYSWLSPLL*RISSAFL 333
+LLF ++ LS+ A AS+Y A P + + + L P+L R+ FL
Sbjct: 87 ILLFTLSLLSTAAAVFTVASLYAAKPASIASSLAALPPILPRLLRTFL 134
>01_06_0332 +
28522797-28523536,28525035-28525067,28525956-28526942,
28527153-28527282
Length = 629
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 580 GNHPQICNTLNLPHKKYRYFDPKTNGFDLXG 672
GN Q C T +P KY+ DPK + + G
Sbjct: 186 GNWSQFCKTFEVPVVKYQQMDPKGDAWRKGG 216
>01_06_0324 - 28485196-28486098
Length = 300
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +1
Query: 580 GNHPQICNTLNLPHKKYRYFDPKTNGFDLXG 672
GN Q C T +P KY+ DPK + + G
Sbjct: 189 GNWSQFCKTFEVPVVKYQQMDPKGDAWRKGG 219
>03_02_0195 -
6325907-6326173,6326996-6327149,6327245-6327336,
6327433-6327534,6328406-6328528,6328635-6328683,
6328759-6328854,6328937-6329276,6329428-6329643,
6329759-6329864,6330144-6330192,6330519-6330792,
6330870-6330960,6331663-6331994,6332084-6332261,
6332815-6332872,6332956-6333089
Length = 886
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = -3
Query: 677 SAPCKSKPLVLGSK*RYFLCGKLRVLQICGWFPQVGVGSQISF 549
+A +++PL++G G+ RVL+ GW P G+G+ +++
Sbjct: 789 TALIENRPLLIGED---LTEGEARVLEEYGWVPNSGLGTMLNY 828
>10_01_0307 + 3382432-3382608,3382690-3382863,3383600-3383695,
3384640-3384709,3385878-3386002,3387128-3387268,
3387362-3387519,3387644-3387803,3390136-3390213,
3390326-3390385,3390473-3390528,3391886-3392090,
3394107-3394192,3394296-3394406,3394536-3394607,
3395453-3395538,3395730-3395878,3396107-3396250,
3396335-3396442,3396997-3397027,3397609-3397713,
3398283-3398407,3398807-3398950,3399073-3399177,
3400748-3400799,3401549-3401696,3401936-3402130,
3402404-3402647,3403152-3403259,3403887-3404034,
3405467-3405525,3405876-3405945,3407008-3407333,
3407666-3409204,3410526-3410733,3410870-3410906,
3411024-3411072,3411143-3411271
Length = 2025
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 579 GKPPANLQHPQLAAQEIPLLRSQDQWFRFAXS 674
G PP + +L +E PL+RS+ WFRFA S
Sbjct: 1765 GCPPIIKEEMKLN-EEPPLIRSKYGWFRFAAS 1795
>06_02_0148 -
12280794-12280962,12281102-12281210,12281283-12281385,
12281587-12281618,12281709-12281926,12282035-12282150,
12282428-12282683,12282912-12282999,12283393-12283468,
12283562-12283620,12285236-12285305,12285399-12285539
Length = 478
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 217 DVILGITEAYKKDTHPKKVNLGVGAYRDDEGKPFVLPSVRKAEEILH 357
D+ + YK+D K LG+ AYR P +LPSV + H
Sbjct: 80 DIAIDSYHRYKEDVGIMK-GLGLNAYRFSVSWPRILPSVEPFVTLFH 125
>02_05_0895 -
32593155-32593190,32594228-32594279,32594544-32594584,
32594795-32594906,32595195-32595268,32595349-32595587,
32595710-32596678,32596725-32596878,32596957-32597244,
32597393-32597534,32598679-32598752,32598870-32598890
Length = 733
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +1
Query: 70 VLDSFVKMAQVLKKLTTQVLKPNNVDTIVGCTGLXASSTWWNNV 201
V DSFV + VL++ + + V + G TGL + +T W ++
Sbjct: 579 VADSFVDIVGVLRETWSTLSSLYQVGSASGSTGLASETTIWGSL 622
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,031,732
Number of Sequences: 37544
Number of extensions: 439315
Number of successful extensions: 1062
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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