Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2085
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0612 + 30602862-30603410                                         32   0.42 
03_02_0913 + 12344096-12344125,12344284-12345970,12346243-123465...    30   2.3  
05_01_0048 + 331155-333077,333208-333354,333540-334087,334481-33...    29   5.2  
01_07_0288 + 42534552-42534558,42535302-42537280,42537367-425375...    29   5.2  
01_03_0159 - 13325949-13326839                                         28   6.9  

>01_06_0612 + 30602862-30603410
          Length = 182

 Score = 32.3 bits (70), Expect = 0.42
 Identities = 16/39 (41%), Positives = 26/39 (66%)
 Frame = +1

Query: 355 AIRQEMALVVASSKYSTRR*MLHIDLCKETIYHDTTYMT 471
           A+++E++LVVA      RR +L + L K+TI  +TT +T
Sbjct: 70  AVKKEISLVVARKDLIIRRSILCLSLSKQTIQDNTTRLT 108


>03_02_0913 + 12344096-12344125,12344284-12345970,12346243-12346573,
            12346712-12347567,12347760-12347883,12348469-12348688,
            12348771-12349229,12349318-12349519
          Length = 1302

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +2

Query: 44   IELTTWXNAWRTTTYTDIDGVIVGIKTGDKFIDSGHNVLAH 166
            + LT W + + +  YT I  V+VGI   DK  D  HN L H
Sbjct: 1094 LALTDWSSVFYSLIYTSIPTVVVGIL--DK--DLSHNTLLH 1130


>05_01_0048 +
           331155-333077,333208-333354,333540-334087,334481-334616
          Length = 917

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -3

Query: 414 LTSGTVLTTGDN*RHLLANSGANKQLTLGLFANIQDNSRVRAVCRHQLT 268
           +++G + T GD  +H L +     +L     A++ D    R  C H LT
Sbjct: 263 VSAGKLFTWGDGDKHRLGHGDKESRLKPTCVASLIDYDFYRVACGHSLT 311


>01_07_0288 +
           42534552-42534558,42535302-42537280,42537367-42537513,
           42537982-42538526,42538906-42538981,42539357-42539437
          Length = 944

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = -3

Query: 414 LTSGTVLTTGDN*RHLLANSGANKQLTLGLFANIQDNSRVRAVCRHQLT 268
           ++SG + T GD  +H L +     +L     A++ D    R  C H LT
Sbjct: 288 ISSGKLFTWGDGDKHRLGHGDKEPRLKPTCVASLIDYDFHRIACGHSLT 336


>01_03_0159 - 13325949-13326839
          Length = 296

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 228 PPIAGKRLPMSMSARTKPGRACASTLWPLSINL 130
           P +AG    MS+ A+  PG A +S+  PL ++L
Sbjct: 10  PGLAGSSSAMSLPAQQMPGMAGSSSAMPLPLSL 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,049,507
Number of Sequences: 37544
Number of extensions: 338391
Number of successful extensions: 605
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)