Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-2084
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    28   1.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   1.8  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    27   2.3  
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2...    27   3.1  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.1  
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual        26   5.4  
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual    25   7.2  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    25   7.2  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +3

Query: 171 ISXEISRIPLVAKMPDWTWM-LFSALFGAVSALTV 272
           I+  +++IP  + +P+W W+ +   L  A+SAL +
Sbjct: 187 IATGLTKIPKSSGLPNWGWLYIIEGLISAISALWI 221


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 3/133 (2%)
 Frame = -2

Query: 511 LASNSASSVAIRRRNQRVSAVLCWNM-NCSIAFRAPSGVLPAPRVSSFRISRGKVTGMLN 335
           LAS+S +S ++   +   S++   +  + S+A  + +    A   SS   S    T   N
Sbjct: 129 LASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTAASN 188

Query: 334 WSSS*VLFSNG--RT*YMRSNSGTVSADTAPNSAENNIQVQSGILATSGILLIS*EIFHT 161
            ++S  L S+    T    + S ++S+  A NSA ++    S + +T+     S  I  T
Sbjct: 189 SATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISST 248

Query: 160 SNNSTLVTRTFTT 122
            ++ST +T + +T
Sbjct: 249 VSSSTPLTSSNST 261


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
 Frame = +3

Query: 279 LLLMYYVRP-----FEKRTQELDQFNMPVTLPLEILNELTRGAGSTPEGALNAMLQFIFQ 443
           L L+YY++      FE  T +++  N  +   +++LNE+ R    TPE     +  F+  
Sbjct: 729 LFLVYYLKTLGILFFETFTSKIEGANRMLREYVDVLNEVCRLRSDTPEVNEGLLFSFLAI 788

Query: 444 QSTADTRWLRRRMATELAELLAKTSSGKIFES 539
              +  R L       L    A T    +FES
Sbjct: 789 LEISSGRTLANEFGKHLLFFEAYTKF--LFES 818


>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 276 LLLLMYYVRPFEKRTQELDQFNMPVTLPLEILNELTRGAGSTPEGALNAMLQFIF 440
           LL L    R F      L   ++P TL    +  L R A + P GA+  ++ FI+
Sbjct: 316 LLYLKTRSRFFRLLDLFLSSTHLPATLIASFIKRLARLALTAPPGAIAIVIPFIY 370


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 292 YMRSNSGTVSADTAPNSAENNI-QVQSGILATSGILLIS*EIFHTSNN 152
           Y R+N+ T S D  PN  +N+I  V S   +T   + I  EI  +  N
Sbjct: 26  YKRNNANTASNDEKPNLEQNDIPSVTSSGSSTPSSISIEKEIKISKGN 73


>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 510

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 339 NMPVTLPLEILNELTRGAGSTPEGALNA 422
           N+P    L +L+ L+    ST  GALN+
Sbjct: 353 NVPANQSLSMLSSLSNSMSSTSNGALNS 380


>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 250 PNSAENNIQVQSGILATSGILLIS*EIFHTSNN-STLVTRTFTTQ 119
           PNS  N + + +G L ++   LIS     TSNN ST  ++   T+
Sbjct: 64  PNSYSNGVSLSNGTLLSTSSPLISTSGQFTSNNVSTTSSQRHNTK 108


>SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1466

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 20/71 (28%), Positives = 30/71 (42%)
 Frame = +3

Query: 225  WMLFSALFGAVSALTVPLLLLMYYVRPFEKRTQELDQFNMPVTLPLEILNELTRGAGSTP 404
            W +F  +  ++    V   +L YY R F K    L   +     PLE     TRGA S+ 
Sbjct: 1364 WSIFLTIIFSILLAAVAGCILYYYSRRFLKGAIRLGS-DSATENPLESGISYTRGAFSSI 1422

Query: 405  EGALNAMLQFI 437
                +A+ Q +
Sbjct: 1423 PIFFSALYQSV 1433


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,804
Number of Sequences: 5004
Number of extensions: 54338
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)